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The map label for this gene is yhaM [H]

Identifier: 108760544

GI number: 108760544

Start: 3277977

End: 3279377

Strand: Reverse

Name: yhaM [H]

Synonym: MXAN_2808

Alternate gene names: 108760544

Gene position: 3279377-3277977 (Counterclockwise)

Preceding gene: 108759477

Following gene: 108758125

Centisome position: 35.88

GC content: 72.45

Gene sequence:

>1401_bases
GTGGAGACCGTCCGCAAGGTGTATGCGGCCGACCTGCGGGAGAAGGACCGCGTCCATACCGTCTTCCGCGTCACCAAGAA
GGAGAAGGTGACCGCCCGCAGTGGCAAGGTGTTCGTCGCCGCCACGCTCGTCGACAAGAGTGGCGAGGTGGACGCGCGCA
TCTTCGACCAGGTCGACGCGCTCGAGCCCGTCTTCCAGCCGGGCGACTTCGTGCTCGTCCAGGGCAACGTCATCCAGTTC
CACGGCCGCACCCAGGTCGTCGTCGAGACCCTGGAGCGCCTGGACCCAGAGCCCCTGGACCCCAAGGAGTTCGAGCCGCC
CCCGGCCCCGCCCGCCGCCGAGGCGAAGCCCGCGCCGGAGACCAAGGCCGCCCCGGAGGCCAAGGCCGCCCCGGAAGCCA
AGGCTGAGAAGCCCGAGAAGGCCGACAAGGGCGAGGCCCGCGGCAACGAGGGCCCGGGTGGCGCGCGCGCCGCCGGCCTC
ATCCGGGAGATGGTCACCGAGCGCATCGGCGACACCTTCGTGAAGCAGCTGCTGCTGGCCTTCCTGGACGACCCGAAGAT
CGCGACCGGCCTGCCGGTGGCCCAGGGCGTCCGGGGCACGCACCACGCGTGGCGTGGCGGACTGGCGGAGCACATCCTGT
CGGTGATGCGGCTGACGCTCCGCGTGGCGGACCAGTACCCCATGGCGGACCGCGACCTGCTGCTGGCCGGCGCGCTGTTG
CAGCAGGTGCAGAAGGCGGCGGACGCCTCCGAGACCTCCGACGAGGGCCGGCTGGTGGGCAACCTCGTCCTGACGGCGCA
GAAGCTGCGCGAGAAGGCGCTGGCCATCCCCGGCTTCCCGCCGCTCCTGGAGCAGCACCTCACGCACCTGGTCATCTCCC
AGCACGGCGACGCGCAGCACGGCAGCCCGAAGTCGCCGGTGACGCTGGAAGCGCAGATCATCCACTCGCTGGAGTCGCTG
GACGCGCGCATCGCCTCGTGGCTGGAGGCCATGCAGCGCGACTCGCACGACAAGTGGACGGACGTGGTGCGCCCCTATGA
GCGCCAGTTGTGGAAGGGCCCCTCGCCCACCTCGCGGGGCCGCGCCCCGGTGGAGGGGGGTGGCCGCCGCAAGGGCCGCG
AGGAGAAGCGCAAGGCCCGGGCGGAGAAGCAGCAGCAGCCGGGTACCCCGGCCGAGGGCGCCCCGCAGCAGGAGCAGGCC
CAGCGCCCGCCCCGCAAGGAGCGTCCGCCCCGCGAGGAGCGCGCGCGTGAGGAGCGCCCGCCCCGTCCGCCCCGCGAGGA
GCGTCCGCCGCGTGACGCGAGCTCGCTGCCCAAGGAGCTGACCTTCAAGCCGTTCAGCGCGCTGACGTCGTTACCGTCCG
ATTCCGGCAACAAGGGCGGTGAGGGTTCCTCGGAGAGCTGA

Upstream 100 bases:

>100_bases
GAAGCCATCCACCCGCGCGGCCGATGGAGTGCTAGTGTCCGCCGCCGCAATGACCAACGAAAACGTGCCCGAGTCCGCGC
CCCCCGCCCCGGAAGGTTCC

Downstream 100 bases:

>100_bases
GGCAGCACATGGTGAAGAGGTTGGGAGAGCGCCTCATCGAGGCGGGACTCGTCAACGCCGGGGCCGTGGAACAGGCCCTG
GAGCACCAGAAAATCACCGG

Product: OB-fold nucleic acid binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
METVRKVYAADLREKDRVHTVFRVTKKEKVTARSGKVFVAATLVDKSGEVDARIFDQVDALEPVFQPGDFVLVQGNVIQF
HGRTQVVVETLERLDPEPLDPKEFEPPPAPPAAEAKPAPETKAAPEAKAAPEAKAEKPEKADKGEARGNEGPGGARAAGL
IREMVTERIGDTFVKQLLLAFLDDPKIATGLPVAQGVRGTHHAWRGGLAEHILSVMRLTLRVADQYPMADRDLLLAGALL
QQVQKAADASETSDEGRLVGNLVLTAQKLREKALAIPGFPPLLEQHLTHLVISQHGDAQHGSPKSPVTLEAQIIHSLESL
DARIASWLEAMQRDSHDKWTDVVRPYERQLWKGPSPTSRGRAPVEGGGRRKGREEKRKARAEKQQQPGTPAEGAPQQEQA
QRPPRKERPPREERAREERPPRPPREERPPRDASSLPKELTFKPFSALTSLPSDSGNKGGEGSSES

Sequences:

>Translated_466_residues
METVRKVYAADLREKDRVHTVFRVTKKEKVTARSGKVFVAATLVDKSGEVDARIFDQVDALEPVFQPGDFVLVQGNVIQF
HGRTQVVVETLERLDPEPLDPKEFEPPPAPPAAEAKPAPETKAAPEAKAAPEAKAEKPEKADKGEARGNEGPGGARAAGL
IREMVTERIGDTFVKQLLLAFLDDPKIATGLPVAQGVRGTHHAWRGGLAEHILSVMRLTLRVADQYPMADRDLLLAGALL
QQVQKAADASETSDEGRLVGNLVLTAQKLREKALAIPGFPPLLEQHLTHLVISQHGDAQHGSPKSPVTLEAQIIHSLESL
DARIASWLEAMQRDSHDKWTDVVRPYERQLWKGPSPTSRGRAPVEGGGRRKGREEKRKARAEKQQQPGTPAEGAPQQEQA
QRPPRKERPPREERAREERPPRPPREERPPRDASSLPKELTFKPFSALTSLPSDSGNKGGEGSSES
>Mature_466_residues
METVRKVYAADLREKDRVHTVFRVTKKEKVTARSGKVFVAATLVDKSGEVDARIFDQVDALEPVFQPGDFVLVQGNVIQF
HGRTQVVVETLERLDPEPLDPKEFEPPPAPPAAEAKPAPETKAAPEAKAAPEAKAEKPEKADKGEARGNEGPGGARAAGL
IREMVTERIGDTFVKQLLLAFLDDPKIATGLPVAQGVRGTHHAWRGGLAEHILSVMRLTLRVADQYPMADRDLLLAGALL
QQVQKAADASETSDEGRLVGNLVLTAQKLREKALAIPGFPPLLEQHLTHLVISQHGDAQHGSPKSPVTLEAQIIHSLESL
DARIASWLEAMQRDSHDKWTDVVRPYERQLWKGPSPTSRGRAPVEGGGRRKGREEKRKARAEKQQQPGTPAEGAPQQEQA
QRPPRKERPPREERAREERPPRPPREERPPRDASSLPKELTFKPFSALTSLPSDSGNKGGEGSSES

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 51115; Mature: 51115

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METVRKVYAADLREKDRVHTVFRVTKKEKVTARSGKVFVAATLVDKSGEVDARIFDQVDA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHH
LEPVFQPGDFVLVQGNVIQFHGRTQVVVETLERLDPEPLDPKEFEPPPAPPAAEAKPAPE
HHHHCCCCCEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
TKAAPEAKAAPEAKAEKPEKADKGEARGNEGPGGARAAGLIREMVTERIGDTFVKQLLLA
CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLDDPKIATGLPVAQGVRGTHHAWRGGLAEHILSVMRLTLRVADQYPMADRDLLLAGALL
HHCCCCHHCCCCHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
QQVQKAADASETSDEGRLVGNLVLTAQKLREKALAIPGFPPLLEQHLTHLVISQHGDAQH
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
GSPKSPVTLEAQIIHSLESLDARIASWLEAMQRDSHDKWTDVVRPYERQLWKGPSPTSRG
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC
RAPVEGGGRRKGREEKRKARAEKQQQPGTPAEGAPQQEQAQRPPRKERPPREERAREERP
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHCCC
PRPPREERPPRDASSLPKELTFKPFSALTSLPSDSGNKGGEGSSES
CCCCCCCCCCCCHHHCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
METVRKVYAADLREKDRVHTVFRVTKKEKVTARSGKVFVAATLVDKSGEVDARIFDQVDA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHH
LEPVFQPGDFVLVQGNVIQFHGRTQVVVETLERLDPEPLDPKEFEPPPAPPAAEAKPAPE
HHHHCCCCCEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
TKAAPEAKAAPEAKAEKPEKADKGEARGNEGPGGARAAGLIREMVTERIGDTFVKQLLLA
CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLDDPKIATGLPVAQGVRGTHHAWRGGLAEHILSVMRLTLRVADQYPMADRDLLLAGALL
HHCCCCHHCCCCHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
QQVQKAADASETSDEGRLVGNLVLTAQKLREKALAIPGFPPLLEQHLTHLVISQHGDAQH
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
GSPKSPVTLEAQIIHSLESLDARIASWLEAMQRDSHDKWTDVVRPYERQLWKGPSPTSRG
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC
RAPVEGGGRRKGREEKRKARAEKQQQPGTPAEGAPQQEQAQRPPRKERPPREERAREERP
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHCCC
PRPPREERPPRDASSLPKELTFKPFSALTSLPSDSGNKGGEGSSES
CCCCCCCCCCCCHHHCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA