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The map label for this gene is psd

Identifier: 108760031

GI number: 108760031

Start: 4439506

End: 4440348

Strand: Direct

Name: psd

Synonym: MXAN_3724

Alternate gene names: 108760031

Gene position: 4439506-4440348 (Clockwise)

Preceding gene: 108762736

Following gene: 108756931

Centisome position: 48.57

GC content: 66.79

Gene sequence:

>843_bases
ATGAACGACCAGACTTTCATGAAGTTGATGCAGGTGTTGCCCAAGTCCGCGCTCTCCACCGTGGTGGGGATGGCCACGCG
ACTGCCCGTGCCCGCGCCGGTGCATCAGGCCGCCATGCGCGCCTTCGCCAAGGCCTACAACGTGGACATGGAGGAGGCCG
AGCACTCCTTCGAGCACTACCCGACCTTCGCCCAGTTCTTCACCCGGGGCCTGAAGCCCGGCCTGCGTCCGGTGGACGCG
GGGGAGAAGGTGGTGGTGTCCCCGGTGGATGGCCGCGTGTCCCAGGTGGGCTATTCGGATTACGGGCGCTGCCTGCAGGC
CAAGGGCATCGAGTACACGGTGGACGAGTTGCTGGGGGATTCCGAGGCCGCCAAGCCCTTCTACGGCGGTGCCTGGACGA
CCATCTACCTGTCGCCGCGCGACTACCACCGCATCCACGCGCCGCTGGGCGGCACCATCACCGGGTACGCGTACATCCCC
GGTGAGTTCTGGCCGGTGAACCCCGCGTCGGTGAAGAACAAGCAGTCCCTGTTCTGCGTGAACGAGCGGCTGGTGACGTA
CCTGGACACCGTGGCGGGCAAGTGCGCGGTGGTGAAGGTGGGTGCCACCTGCGTGTCGCGCATCAAGGCGGCCTACGACG
AGGTGACGACGCACACCGGGCAGCCCGGCAAGGTGCACCGCTACGGCTCGGCCATGCCGGTGGAGAAGGGTGGGGAGCTG
GGCCGCTTCGAGATGGGCTCCACCGTCATCCTCCTGTTCGAGCCCAAGCGCGTCACCTGGGACGACAGCCTCCAGGAGGA
AGCGGTGGTTCGGCTGGGCAAGCGAATCGGAGTCATCACGTGA

Upstream 100 bases:

>100_bases
CACGCTGTTACCCAAGAGTGCCGTGCAGACTGTCCCCGTCACTCCCGACGGCGGTCCGGCACCCGCGACCGACGCCGGTC
GCTAGAACCGATTCGCCGAT

Downstream 100 bases:

>100_bases
GTCAGAAGGTCGCGGGCGTCAAGGGCATGAACGATCTCCTCCCTGGGGAGATCGAAATCTGGCAGCACGTGGAGGCGCAG
GCCCGCGAGCTGTTCGGCCG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MNDQTFMKLMQVLPKSALSTVVGMATRLPVPAPVHQAAMRAFAKAYNVDMEEAEHSFEHYPTFAQFFTRGLKPGLRPVDA
GEKVVVSPVDGRVSQVGYSDYGRCLQAKGIEYTVDELLGDSEAAKPFYGGAWTTIYLSPRDYHRIHAPLGGTITGYAYIP
GEFWPVNPASVKNKQSLFCVNERLVTYLDTVAGKCAVVKVGATCVSRIKAAYDEVTTHTGQPGKVHRYGSAMPVEKGGEL
GRFEMGSTVILLFEPKRVTWDDSLQEEAVVRLGKRIGVIT

Sequences:

>Translated_280_residues
MNDQTFMKLMQVLPKSALSTVVGMATRLPVPAPVHQAAMRAFAKAYNVDMEEAEHSFEHYPTFAQFFTRGLKPGLRPVDA
GEKVVVSPVDGRVSQVGYSDYGRCLQAKGIEYTVDELLGDSEAAKPFYGGAWTTIYLSPRDYHRIHAPLGGTITGYAYIP
GEFWPVNPASVKNKQSLFCVNERLVTYLDTVAGKCAVVKVGATCVSRIKAAYDEVTTHTGQPGKVHRYGSAMPVEKGGEL
GRFEMGSTVILLFEPKRVTWDDSLQEEAVVRLGKRIGVIT
>Mature_280_residues
MNDQTFMKLMQVLPKSALSTVVGMATRLPVPAPVHQAAMRAFAKAYNVDMEEAEHSFEHYPTFAQFFTRGLKPGLRPVDA
GEKVVVSPVDGRVSQVGYSDYGRCLQAKGIEYTVDELLGDSEAAKPFYGGAWTTIYLSPRDYHRIHAPLGGTITGYAYIP
GEFWPVNPASVKNKQSLFCVNERLVTYLDTVAGKCAVVKVGATCVSRIKAAYDEVTTHTGQPGKVHRYGSAMPVEKGGEL
GRFEMGSTVILLFEPKRVTWDDSLQEEAVVRLGKRIGVIT

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=304, Percent_Identity=29.9342105263158, Blast_Score=129, Evalue=4e-30,
Organism=Escherichia coli, GI1790604, Length=283, Percent_Identity=35.6890459363958, Blast_Score=170, Evalue=9e-44,
Organism=Caenorhabditis elegans, GI71980843, Length=249, Percent_Identity=29.718875502008, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI71980840, Length=255, Percent_Identity=29.0196078431373, Blast_Score=110, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321609, Length=249, Percent_Identity=27.710843373494, Blast_Score=95, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6324160, Length=122, Percent_Identity=35.2459016393443, Blast_Score=82, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24649526, Length=304, Percent_Identity=29.6052631578947, Blast_Score=114, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24649528, Length=304, Percent_Identity=29.6052631578947, Blast_Score=114, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24649524, Length=304, Percent_Identity=29.6052631578947, Blast_Score=114, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_MYXXD (Q1D614)

Other databases:

- EMBL:   CP000113
- RefSeq:   YP_631909.1
- STRING:   Q1D614
- GeneID:   4103138
- GenomeReviews:   CP000113_GR
- KEGG:   mxa:MXAN_3724
- TIGR:   MXAN_3724
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- PhylomeDB:   Q1D614
- ProtClustDB:   CLSK945677
- BioCyc:   MXAN246197:MXAN_3724-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 30726; Mature: 30726

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDQTFMKLMQVLPKSALSTVVGMATRLPVPAPVHQAAMRAFAKAYNVDMEEAEHSFEHY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC
PTFAQFFTRGLKPGLRPVDAGEKVVVSPVDGRVSQVGYSDYGRCLQAKGIEYTVDELLGD
CHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHCCHHHHHHHHHHCCCEEEHHHHCCC
SEAAKPFYGGAWTTIYLSPRDYHRIHAPLGGTITGYAYIPGEFWPVNPASVKNKQSLFCV
CCCCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEH
NERLVTYLDTVAGKCAVVKVGATCVSRIKAAYDEVTTHTGQPGKVHRYGSAMPVEKGGEL
HHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC
GRFEMGSTVILLFEPKRVTWDDSLQEEAVVRLGKRIGVIT
CEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNDQTFMKLMQVLPKSALSTVVGMATRLPVPAPVHQAAMRAFAKAYNVDMEEAEHSFEHY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC
PTFAQFFTRGLKPGLRPVDAGEKVVVSPVDGRVSQVGYSDYGRCLQAKGIEYTVDELLGD
CHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHCCHHHHHHHHHHCCCEEEHHHHCCC
SEAAKPFYGGAWTTIYLSPRDYHRIHAPLGGTITGYAYIPGEFWPVNPASVKNKQSLFCV
CCCCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEH
NERLVTYLDTVAGKCAVVKVGATCVSRIKAAYDEVTTHTGQPGKVHRYGSAMPVEKGGEL
HHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCC
GRFEMGSTVILLFEPKRVTWDDSLQEEAVVRLGKRIGVIT
CEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA