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The map label for this gene is yhdW [H]

Identifier: 108759970

GI number: 108759970

Start: 3015014

End: 3015835

Strand: Reverse

Name: yhdW [H]

Synonym: MXAN_2592

Alternate gene names: 108759970

Gene position: 3015835-3015014 (Counterclockwise)

Preceding gene: 108759304

Following gene: 108760699

Centisome position: 33.0

GC content: 70.19

Gene sequence:

>822_bases
ATGGCATCCTCTCCCCTCCCCTTCCTCCGCGGCCTGCGGCCCACGCTGCACATCGCCCACCGTGGGGGCGCGGCCGTGGC
GCCGGAGAACACGCTGGCGGCCTTCCGGCAGGCCGTGGAGCGCTATCGCACGGACATGCTGGAGCTCGACCTCCACCTCA
CCCGGGACGGGGAGCTCGTCGTTGCCCATGACGCCACGCTGGAGCGCTGCACGGACGGCACGGGCCCTCTGGCCGCGCTC
ACGCTGGCCGAACTCCAGCGGCTGGACGCGGGCTTCCACTTCACGCCCGATGAAGGCCGCACCCTCCCATTCCGGGGCCA
GGGCGTGCGCATCCCCAGCTTCCGCGAACTGCTGCGCGCCTTCCCCAACCTGCGCCTCAACGTGGAGCTCAAGCCGGATG
TCCCCGGCATCGAGGACACCTTCGCCCAGGTGCTTCAAGAGGAAGGCGCCCTGGAGCGGGTGTGCATGGGCAGCGAACTG
GACACCGTGGCCGAGCGGCTGGCGGAGCGTCTCCCTTCCGCCTGCCACTTCTACCCCCGCGATGCACTCGCGGCCTTCGT
CATCGCCCTGCGTGGCGGAGACACGCCGCCGGAGGACCCGCGCTACACCGTGCTCGACATGCCGCTCTACTTCGGTGAGA
TCCGGCTGGTGGACTCGGACTTCCTCCAGCAGTGCGCGGCCCGGGGCAAGTGGGTCAACGTCTGGACGGTGGATGACCCG
GCGGAGATGCACCAGCTCCTGGCGGAAGGCGTCGGCGGCATCATGACCGACCGGCCGGACGTCCTGAGGCAGATCATGGA
CGCCCCCTCGAAGCCGGGATAA

Upstream 100 bases:

>100_bases
GTGGCATGGGATGCCAGCCCTGGCGGTGCCCCTCCACGAATCTTCGTCTACCGCTTCAACCGCTAGCCAGCCCCACGCCG
CCAGTCGCTACACTGGCGGC

Downstream 100 bases:

>100_bases
GCCCCGGATTCATGCCTCGCACCACCGCTCGCACGCGCTCGAAGCCCGCCCAGGCCGCCCCCGCCCAGGAAAAGGCCCCC
GCGGCCCCCCCGCGTTCCCG

Product: glycerophosphoryl diester phosphodiesterase family protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MASSPLPFLRGLRPTLHIAHRGGAAVAPENTLAAFRQAVERYRTDMLELDLHLTRDGELVVAHDATLERCTDGTGPLAAL
TLAELQRLDAGFHFTPDEGRTLPFRGQGVRIPSFRELLRAFPNLRLNVELKPDVPGIEDTFAQVLQEEGALERVCMGSEL
DTVAERLAERLPSACHFYPRDALAAFVIALRGGDTPPEDPRYTVLDMPLYFGEIRLVDSDFLQQCAARGKWVNVWTVDDP
AEMHQLLAEGVGGIMTDRPDVLRQIMDAPSKPG

Sequences:

>Translated_273_residues
MASSPLPFLRGLRPTLHIAHRGGAAVAPENTLAAFRQAVERYRTDMLELDLHLTRDGELVVAHDATLERCTDGTGPLAAL
TLAELQRLDAGFHFTPDEGRTLPFRGQGVRIPSFRELLRAFPNLRLNVELKPDVPGIEDTFAQVLQEEGALERVCMGSEL
DTVAERLAERLPSACHFYPRDALAAFVIALRGGDTPPEDPRYTVLDMPLYFGEIRLVDSDFLQQCAARGKWVNVWTVDDP
AEMHQLLAEGVGGIMTDRPDVLRQIMDAPSKPG
>Mature_272_residues
ASSPLPFLRGLRPTLHIAHRGGAAVAPENTLAAFRQAVERYRTDMLELDLHLTRDGELVVAHDATLERCTDGTGPLAALT
LAELQRLDAGFHFTPDEGRTLPFRGQGVRIPSFRELLRAFPNLRLNVELKPDVPGIEDTFAQVLQEEGALERVCMGSELD
TVAERLAERLPSACHFYPRDALAAFVIALRGGDTPPEDPRYTVLDMPLYFGEIRLVDSDFLQQCAARGKWVNVWTVDDPA
EMHQLLAEGVGGIMTDRPDVLRQIMDAPSKPG

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI260763876, Length=279, Percent_Identity=25.8064516129032, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI260763880, Length=121, Percent_Identity=41.3223140495868, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI260763878, Length=121, Percent_Identity=41.3223140495868, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI7706617, Length=119, Percent_Identity=41.1764705882353, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI1789858, Length=260, Percent_Identity=29.6153846153846, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 30175; Mature: 30044

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSPLPFLRGLRPTLHIAHRGGAAVAPENTLAAFRQAVERYRTDMLELDLHLTRDGELV
CCCCCCHHHHCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEE
VAHDATLERCTDGTGPLAALTLAELQRLDAGFHFTPDEGRTLPFRGQGVRIPSFRELLRA
EEECCHHHHHCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHH
FPNLRLNVELKPDVPGIEDTFAQVLQEEGALERVCMGSELDTVAERLAERLPSACHFYPR
CCCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCH
DALAAFVIALRGGDTPPEDPRYTVLDMPLYFGEIRLVDSDFLQQCAARGKWVNVWTVDDP
HHHHHHHHHHCCCCCCCCCCCEEEEECCEEECEEEEECHHHHHHHHHCCCEEEEEECCCH
AEMHQLLAEGVGGIMTDRPDVLRQIMDAPSKPG
HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ASSPLPFLRGLRPTLHIAHRGGAAVAPENTLAAFRQAVERYRTDMLELDLHLTRDGELV
CCCCCHHHHCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEE
VAHDATLERCTDGTGPLAALTLAELQRLDAGFHFTPDEGRTLPFRGQGVRIPSFRELLRA
EEECCHHHHHCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHH
FPNLRLNVELKPDVPGIEDTFAQVLQEEGALERVCMGSELDTVAERLAERLPSACHFYPR
CCCCEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCH
DALAAFVIALRGGDTPPEDPRYTVLDMPLYFGEIRLVDSDFLQQCAARGKWVNVWTVDDP
HHHHHHHHHHCCCCCCCCCCCEEEEECCEEECEEEEECHHHHHHHHHCCCEEEEEECCCH
AEMHQLLAEGVGGIMTDRPDVLRQIMDAPSKPG
HHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]