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The map label for this gene is ihfB [H]

Identifier: 108759553

GI number: 108759553

Start: 7010263

End: 7010616

Strand: Direct

Name: ihfB [H]

Synonym: MXAN_5642

Alternate gene names: 108759553

Gene position: 7010263-7010616 (Clockwise)

Preceding gene: 108758048

Following gene: 108757561

Centisome position: 76.7

GC content: 64.97

Gene sequence:

>354_bases
ATGCTCAAGTCCGATCTGATCAACATCCTCGTGGCCAAGAGGGGCGTGACGCAGAAGCAGGCTGAGGCCACCATCGAGAC
GATTTTCGAGTCGATGAAGGATGCCCTCTGCCGCGGCGAGAACATCGAGATTCGCGGGCTCGGTGCCTTTCACGTGAAGA
ACTACCAGGGCTACCAAGGCCGCAACCCGAAGACGGGACAGGTCATCCCGGTGAAGCCCAAGCGCGGCCTGCTCTTCCGC
ACGGGCAAGGAGCTGCGCGACCGCGTGAACCGTCCGGCGCCCCAGCAGGCCCAGACGGAGCTGCCCCCGCTTCCCGAAAG
CAAGGGGCCGGGCAACACGGGCACGGGGCTCTAG

Upstream 100 bases:

>100_bases
CCTGCTTGCACGAAGGATGCGTTCTGTTATGTTTTCAGGATTCGACCACGGGCCAGAGCGCCCTGTTTCCAAGGGGTCAC
CGGGTTTGCGGGAGCGTCCG

Downstream 100 bases:

>100_bases
GCCCACCTCCGTCAGCGCCCCACCGCCACCGGCGACAGCCGGCCGATGGGGCGAATCTGGAGGGCCCCATCCAGCTCGCC
ATAGGTGAGCACCGCAACAT

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MLKSDLINILVAKRGVTQKQAEATIETIFESMKDALCRGENIEIRGLGAFHVKNYQGYQGRNPKTGQVIPVKPKRGLLFR
TGKELRDRVNRPAPQQAQTELPPLPESKGPGNTGTGL

Sequences:

>Translated_117_residues
MLKSDLINILVAKRGVTQKQAEATIETIFESMKDALCRGENIEIRGLGAFHVKNYQGYQGRNPKTGQVIPVKPKRGLLFR
TGKELRDRVNRPAPQQAQTELPPLPESKGPGNTGTGL
>Mature_117_residues
MLKSDLINILVAKRGVTQKQAEATIETIFESMKDALCRGENIEIRGLGAFHVKNYQGYQGRNPKTGQVIPVKPKRGLLFR
TGKELRDRVNRPAPQQAQTELPPLPESKGPGNTGTGL

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=96, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=40.6593406593407, Blast_Score=66, Evalue=8e-13,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=34.4444444444444, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 12879; Mature: 12879

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKSDLINILVAKRGVTQKQAEATIETIFESMKDALCRGENIEIRGLGAFHVKNYQGYQG
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCC
RNPKTGQVIPVKPKRGLLFRTGKELRDRVNRPAPQQAQTELPPLPESKGPGNTGTGL
CCCCCCCEEECCCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKSDLINILVAKRGVTQKQAEATIETIFESMKDALCRGENIEIRGLGAFHVKNYQGYQG
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCC
RNPKTGQVIPVKPKRGLLFRTGKELRDRVNRPAPQQAQTELPPLPESKGPGNTGTGL
CCCCCCCEEECCCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA