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The map label for this gene is yqfA [C]

Identifier: 108759443

GI number: 108759443

Start: 6896278

End: 6896838

Strand: Direct

Name: yqfA [C]

Synonym: MXAN_5546

Alternate gene names: 108759443

Gene position: 6896278-6896838 (Clockwise)

Preceding gene: 108763764

Following gene: 108759233

Centisome position: 75.45

GC content: 69.88

Gene sequence:

>561_bases
TTGATGGCCCCGACCGACCGGGCCGCGACGGCCGCCGCCGTGTTCGCCGTCAGCCTGGTGGTGTTGTTCTCGGTCAGCGC
GACCTACCACCGGGTGAACTGGTCCACGCGAGGCAGGACGTGGATGCGGCGCATGGACCACGCCTCCATCTTCATCCTCA
TCGCGGGCACCTATACGCCCGTCGCGCTGCTGGGCATCTCCGGGGCCGCGGGCAACCGCCTGCTGCTCCTCATCTGGGCA
GGCGCGCTCGCTGGAGTCCTTCAGTCGCTGTTCTGGATACAGGCGCCCAAGGTGGTGACGGCGGCGTTGGCCGTCGCGGT
CGGCTGGACGCTGGTGCCGTACTTCGATGAAGCACGGCAAGCCCTCACGGGCAGCAACCTGGCGCTCATCCTCGCGGGGG
GCGTCGCCTACACGGCGGGCGCCCTCGCCTATGCCCTGAAGCGGCCGAACCTCCGGCCCGGCGTCTTCGGCTACCACGAG
TTGTTCCACGCCCTGACGCTGGTCGGTGCGGGGCTCCACTTCACGGTCGTCCTGCGGCTCGTCCGCGCCGCGACCCTGTA
A

Upstream 100 bases:

>100_bases
GCCGGTCCTGAGCGCCCAGGCCGCGGAGAAGCCGAAACTGCGGGGGGTCCTGCATCAGTTCGCCGCCACGGGTGCGCTGG
GAGCGGGCCTGGTCCTCGTC

Downstream 100 bases:

>100_bases
ACACAGGAATGCCAGTGCCAGCGTTCTGACCTCCAGACAACATCGGCCGGCCCGGCCGGCCGCTTGACTAGAATCTGGCT
CTAGAATCAGATTCTAGTCA

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MMAPTDRAATAAAVFAVSLVVLFSVSATYHRVNWSTRGRTWMRRMDHASIFILIAGTYTPVALLGISGAAGNRLLLLIWA
GALAGVLQSLFWIQAPKVVTAALAVAVGWTLVPYFDEARQALTGSNLALILAGGVAYTAGALAYALKRPNLRPGVFGYHE
LFHALTLVGAGLHFTVVLRLVRAATL

Sequences:

>Translated_186_residues
MMAPTDRAATAAAVFAVSLVVLFSVSATYHRVNWSTRGRTWMRRMDHASIFILIAGTYTPVALLGISGAAGNRLLLLIWA
GALAGVLQSLFWIQAPKVVTAALAVAVGWTLVPYFDEARQALTGSNLALILAGGVAYTAGALAYALKRPNLRPGVFGYHE
LFHALTLVGAGLHFTVVLRLVRAATL
>Mature_186_residues
MMAPTDRAATAAAVFAVSLVVLFSVSATYHRVNWSTRGRTWMRRMDHASIFILIAGTYTPVALLGISGAAGNRLLLLIWA
GALAGVLQSLFWIQAPKVVTAALAVAVGWTLVPYFDEARQALTGSNLALILAGGVAYTAGALAYALKRPNLRPGVFGYHE
LFHALTLVGAGLHFTVVLRLVRAATL

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=168, Percent_Identity=32.7380952380952, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 19760; Mature: 19760

Theoretical pI: Translated: 11.34; Mature: 11.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAPTDRAATAAAVFAVSLVVLFSVSATYHRVNWSTRGRTWMRRMDHASIFILIAGTYTP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHCCCEEEEEEECCCCC
VALLGISGAAGNRLLLLIWAGALAGVLQSLFWIQAPKVVTAALAVAVGWTLVPYFDEARQ
CCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALTGSNLALILAGGVAYTAGALAYALKRPNLRPGVFGYHELFHALTLVGAGLHFTVVLRL
HHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
VRAATL
HHHHCC
>Mature Secondary Structure
MMAPTDRAATAAAVFAVSLVVLFSVSATYHRVNWSTRGRTWMRRMDHASIFILIAGTYTP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHCCCEEEEEEECCCCC
VALLGISGAAGNRLLLLIWAGALAGVLQSLFWIQAPKVVTAALAVAVGWTLVPYFDEARQ
CCEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALTGSNLALILAGGVAYTAGALAYALKRPNLRPGVFGYHELFHALTLVGAGLHFTVVLRL
HHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
VRAATL
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]