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The map label for this gene is ycdC [C]

Identifier: 108759233

GI number: 108759233

Start: 6896938

End: 6897561

Strand: Direct

Name: ycdC [C]

Synonym: MXAN_5547

Alternate gene names: 108759233

Gene position: 6896938-6897561 (Clockwise)

Preceding gene: 108759443

Following gene: 108757404

Centisome position: 75.46

GC content: 68.11

Gene sequence:

>624_bases
ATGGAGCGTAAACGTCGCAGCGCGACCGGCGAGCAGAGCCGTCGTGCCATCCTGGATGCCGCGCTGGATTGCTTCTCCCG
GCTGGGCTGGGCGGCGACGACCATCGAGGACATCCGCAAGGTCAGCGGCGCCAGCGTGGGCAGCGTCTACCACCACTTCG
GGGCGAAGGAAGGCATCGCGGTGGCGCTCTACATCGACTGCCTGCGCCTCCATCAGGAGTCGTTGCGGGGTCGGCTGGAG
CGGAAGCACGACGCGGAAGCCTTCGTGCGCACCATCGTCACCCACCACATCGCCTGGTCCCGGGAGCACCCGGAGGCCGC
CCGCTATCTCCTGCGCATGCGCCGTGAGGAAGCCGTGGCCGCGGCCGAACAGGAAATCCAATCCGCGACGGGCGACTTCA
TCCGGGAAGGCTTCAGCCGGATGAAGGCCCATGCCCAGGCGGGCGAGCTGCTGCCACTGCCTCCGGCCGTCTACATGCCG
CTGATGCTTGGCCCCGCCCAGGAATTGCTGCGCGCCTGGGCCAACGGCCAAGTGGAGCTCAAGGCCGGCATCGAGAAGGT
CCTCGCAGATGCCGCCTGGCGATGCCTGCGTCCAGAGACAGCCCCCTCCAGGAAGGTGCCATGA

Upstream 100 bases:

>100_bases
AACACAGGAATGCCAGTGCCAGCGTTCTGACCTCCAGACAACATCGGCCGGCCCGGCCGGCCGCTTGACTAGAATCTGGC
TCTAGAATCAGATTCTAGTC

Downstream 100 bases:

>100_bases
TGCAGGATGACGCTTTGCCCGCTCCCGTCGCGACGGCCTCACCGGAGGTCGTCCGGATTCCCGCCCGGGATGGGCTCCCA
CTGGCCGCGACGGTGTACCA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Regulatory Protein TetR; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TetR Transcription Regulator; Transcriptional Regulatory Protein; Transcriptional Regulatory Protein Tetr-Family

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MERKRRSATGEQSRRAILDAALDCFSRLGWAATTIEDIRKVSGASVGSVYHHFGAKEGIAVALYIDCLRLHQESLRGRLE
RKHDAEAFVRTIVTHHIAWSREHPEAARYLLRMRREEAVAAAEQEIQSATGDFIREGFSRMKAHAQAGELLPLPPAVYMP
LMLGPAQELLRAWANGQVELKAGIEKVLADAAWRCLRPETAPSRKVP

Sequences:

>Translated_207_residues
MERKRRSATGEQSRRAILDAALDCFSRLGWAATTIEDIRKVSGASVGSVYHHFGAKEGIAVALYIDCLRLHQESLRGRLE
RKHDAEAFVRTIVTHHIAWSREHPEAARYLLRMRREEAVAAAEQEIQSATGDFIREGFSRMKAHAQAGELLPLPPAVYMP
LMLGPAQELLRAWANGQVELKAGIEKVLADAAWRCLRPETAPSRKVP
>Mature_207_residues
MERKRRSATGEQSRRAILDAALDCFSRLGWAATTIEDIRKVSGASVGSVYHHFGAKEGIAVALYIDCLRLHQESLRGRLE
RKHDAEAFVRTIVTHHIAWSREHPEAARYLLRMRREEAVAAAEQEIQSATGDFIREGFSRMKAHAQAGELLPLPPAVYMP
LMLGPAQELLRAWANGQVELKAGIEKVLADAAWRCLRPETAPSRKVP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23143; Mature: 23143

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERKRRSATGEQSRRAILDAALDCFSRLGWAATTIEDIRKVSGASVGSVYHHFGAKEGIA
CCCHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCHH
VALYIDCLRLHQESLRGRLERKHDAEAFVRTIVTHHIAWSREHPEAARYLLRMRREEAVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AAEQEIQSATGDFIREGFSRMKAHAQAGELLPLPPAVYMPLMLGPAQELLRAWANGQVEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCEEH
KAGIEKVLADAAWRCLRPETAPSRKVP
HHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MERKRRSATGEQSRRAILDAALDCFSRLGWAATTIEDIRKVSGASVGSVYHHFGAKEGIA
CCCHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCHH
VALYIDCLRLHQESLRGRLERKHDAEAFVRTIVTHHIAWSREHPEAARYLLRMRREEAVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AAEQEIQSATGDFIREGFSRMKAHAQAGELLPLPPAVYMPLMLGPAQELLRAWANGQVEL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCEEH
KAGIEKVLADAAWRCLRPETAPSRKVP
HHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA