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The map label for this gene is 108759343

Identifier: 108759343

GI number: 108759343

Start: 248324

End: 249289

Strand: Direct

Name: 108759343

Synonym: MXAN_0203

Alternate gene names: NA

Gene position: 248324-249289 (Clockwise)

Preceding gene: 108757269

Following gene: 108760747

Centisome position: 2.72

GC content: 74.64

Gene sequence:

>966_bases
ATGGACCGCTCCGCGCGCGAAGGACTGGCGCAGGCCGTGCGCGAGCACGAGCGCTTCCTGTGGGGGCTCTGCTACCGCAT
GACGGGCGTGTCGGCGGACGCGGAGGACCTGGTGCAGGAGACCTTCGTGCGCGCCCTGGCCTCGCCGCCCGCGCGAACGG
AGGCGCTGCGCCCCTGGCTGACGCGGGTGGCGGTGAACCTGGCCCGGGACACGTTGCGGCGGCGCAAGCGCGAGGGCTAC
GTGGGCCCCTGGCTGCCCTCGCCGCTGGACACGGGAGAGGAGGAGCTGCCGCCCCCTGGCGTGGAGGCGCGGCTGCCGGG
AGGCGGCTCCACGGAGGGTCGCTACGCGCTGCTGGAGAGTGTCTCCTTCGCCTTCCTGCTCGCGCTGGAGGTGCTGTCTC
CCAAGCAGCGGGCGGTGCTGCTCCTGCGCGACGTGTTCGACTACTCGGTGCGCGAGGTGGCCGAGGCGCTGAACCTGCGC
GAGTCCAACGTGAAGGTGGTGCACCACCGCGCGCGGGCGGCGATGGCGGCGTACGACCGCGCCCGCTGCCTGCCGACGCG
GGAGTTCCAAGCGCGCGCCCGCGCCGCGCTGGAGGGCTTCCTGGGTGCGCTGCTGACGGGGGACGTGGCGGCGGCGGAGG
CGCTGCTCGCCAGCGACGTGTGCGCGCTGTCGGACGGCGGTGGCCAGTACCGCGCCGCGCGCGTGCCGGTGCTGGGACAG
TCGCGCGTGCTGCTGCTCTACCGGCGGCTGATGGAGATGCGGGGGGCGCCCTCCGCCGTGGAGCTGCGGATGCTCAACGG
CCTGCCGGCGGTGGTGGCCGTGTTTCCTCCGCCCCAGCGCGACCCGCAGGCGGGCACCCAGATGGTGGTCCGCGTGGAGC
TGGGGGCGGACGGGCGAATCACACAGGTCCACTCCATCCTCACGGACCGCAAGCTCGCCGGGCTGCGCATGCCCGTGCCC
GCCTGA

Upstream 100 bases:

>100_bases
CTTGCTCGCGGAGGCGTCCTTCGCCAGCGCGGAGTCGGTGGCGCGCGCGCTCGTCCCGGGCCAGCAGGTGGCGTCACGCC
GGGCAGTGGGGCGCTGACGC

Downstream 100 bases:

>100_bases
GCGCTCCGGCGGCGCGTCAGCTCGCCGGGCGCCGGGCGATGATGAGCTCGCTCACGCCCTGGAGCCGCTGCACGCGCCGC
TCGATGTCGAAGCCCGCGCG

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Family RNA Polymerase Sigma Factor; ECF-Sigma Factor; RNA Polymerase Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase ECF-Type Sigma Factor; ECF Sigma Factor; Sigma Factor Sigma; RNA Polymerase; Sigma-70 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF-Family Protein RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Factor Sigma-; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70-Like Factor; RNA Polymerase ECF-Type Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MDRSAREGLAQAVREHERFLWGLCYRMTGVSADAEDLVQETFVRALASPPARTEALRPWLTRVAVNLARDTLRRRKREGY
VGPWLPSPLDTGEEELPPPGVEARLPGGGSTEGRYALLESVSFAFLLALEVLSPKQRAVLLLRDVFDYSVREVAEALNLR
ESNVKVVHHRARAAMAAYDRARCLPTREFQARARAALEGFLGALLTGDVAAAEALLASDVCALSDGGGQYRAARVPVLGQ
SRVLLLYRRLMEMRGAPSAVELRMLNGLPAVVAVFPPPQRDPQAGTQMVVRVELGADGRITQVHSILTDRKLAGLRMPVP
A

Sequences:

>Translated_321_residues
MDRSAREGLAQAVREHERFLWGLCYRMTGVSADAEDLVQETFVRALASPPARTEALRPWLTRVAVNLARDTLRRRKREGY
VGPWLPSPLDTGEEELPPPGVEARLPGGGSTEGRYALLESVSFAFLLALEVLSPKQRAVLLLRDVFDYSVREVAEALNLR
ESNVKVVHHRARAAMAAYDRARCLPTREFQARARAALEGFLGALLTGDVAAAEALLASDVCALSDGGGQYRAARVPVLGQ
SRVLLLYRRLMEMRGAPSAVELRMLNGLPAVVAVFPPPQRDPQAGTQMVVRVELGADGRITQVHSILTDRKLAGLRMPVP
A
>Mature_321_residues
MDRSAREGLAQAVREHERFLWGLCYRMTGVSADAEDLVQETFVRALASPPARTEALRPWLTRVAVNLARDTLRRRKREGY
VGPWLPSPLDTGEEELPPPGVEARLPGGGSTEGRYALLESVSFAFLLALEVLSPKQRAVLLLRDVFDYSVREVAEALNLR
ESNVKVVHHRARAAMAAYDRARCLPTREFQARARAALEGFLGALLTGDVAAAEALLASDVCALSDGGGQYRAARVPVLGQ
SRVLLLYRRLMEMRGAPSAVELRMLNGLPAVVAVFPPPQRDPQAGTQMVVRVELGADGRITQVHSILTDRKLAGLRMPVP
A

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35132; Mature: 35132

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRSAREGLAQAVREHERFLWGLCYRMTGVSADAEDLVQETFVRALASPPARTEALRPWL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
TRVAVNLARDTLRRRKREGYVGPWLPSPLDTGEEELPPPGVEARLPGGGSTEGRYALLES
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHH
VSFAFLLALEVLSPKQRAVLLLRDVFDYSVREVAEALNLRESNVKVVHHRARAAMAAYDR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ARCLPTREFQARARAALEGFLGALLTGDVAAAEALLASDVCALSDGGGQYRAARVPVLGQ
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
SRVLLLYRRLMEMRGAPSAVELRMLNGLPAVVAVFPPPQRDPQAGTQMVVRVELGADGRI
HHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCH
TQVHSILTDRKLAGLRMPVPA
HHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDRSAREGLAQAVREHERFLWGLCYRMTGVSADAEDLVQETFVRALASPPARTEALRPWL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
TRVAVNLARDTLRRRKREGYVGPWLPSPLDTGEEELPPPGVEARLPGGGSTEGRYALLES
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHH
VSFAFLLALEVLSPKQRAVLLLRDVFDYSVREVAEALNLRESNVKVVHHRARAAMAAYDR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ARCLPTREFQARARAALEGFLGALLTGDVAAAEALLASDVCALSDGGGQYRAARVPVLGQ
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
SRVLLLYRRLMEMRGAPSAVELRMLNGLPAVVAVFPPPQRDPQAGTQMVVRVELGADGRI
HHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCH
TQVHSILTDRKLAGLRMPVPA
HHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA