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The map label for this gene is oprF [H]

Identifier: 108759341

GI number: 108759341

Start: 2421541

End: 2423460

Strand: Reverse

Name: oprF [H]

Synonym: MXAN_2090

Alternate gene names: 108759341

Gene position: 2423460-2421541 (Counterclockwise)

Preceding gene: 108763039

Following gene: 108759646

Centisome position: 26.52

GC content: 69.79

Gene sequence:

>1920_bases
ATGCAAGGCTTCAGCTTGCGTGGTTCAGCCACCCGACTCGCCGTCCTGGGCCTGCTTCTGGCCTCGGTGGCTGCGCACGC
CGACCACGACCCGTTCGCTCGCGGATTCGACGCCGTTCCCGTCAAGGCCACCGCGGCTCAGCACAGCGGTATCGCGCTGG
AAGGCACGAGCAACGCGCTGCCCGCTGGGAGCTTCCGCGCGGCGCTCTTGTTCGACTTCAACTGGCGCATCCTCGCCCTG
AAGCTGGGCGACGAGAAGCTGGGCGACCTCTTGCCCTACCGGCTCGATGCGCACCTGCTGTTCGCCTATCAGCTCCATGA
GCGCTTGGAGCTGGCGGTGGACCTGCCTGTCACGCTGCTCCAGGGTGACAACTTCCAGTTGCTGCGCGACGCGCTGAACG
CGCCCAACTTCCCGGGCGCCGCGGGCGTGGGCCGCACCACGCTGGGCGACATCCGCCTGCTGCCGCGCGTCCACCTGCTG
GACCGCGAGCAGTTCCCAGTGGGCGTGTCGCTCGTCGCCGAGGTCCGGCTGCCCACGGGCAGCGCCTCCAGCTTCACCGG
CGAGCGCGGAGTGCTCTGGGCGCCTCGCATCGCGCTGGAGCAGCGATTCACCGCCCTCCCCGTGCCCATCCGCGTGCTCG
GCAACGTGGGCGTGCGGCTGCGGCCCCATGCGCAGTACCTCAACCTGCTCGTGGATGACGAGCTGACGCTGGGGGCGGGC
GCCATCGCGGAGCTGCCCAACCTGGGCCGCTTCACGGACGTGGAGGCCGTGGCGGAAATGCACCTGGGCACCCCGCTGGT
GCGCCCCTTCAACTTCGACCAGGCCGACACGCTCAAGACGCCGTGGGAGGCGCTGGTGGGCGCCCGCGCCAAGGTCTGGG
GCAACTGGGGCATGGAGCTCAACGTCGGCCGCGGCATCAACCTGTCCAGCGGCTACGGCCGTGAGGCCCTGCGGGTGATG
TTCGCGGTGCGCTACGACGAGACGTTCATCGACTCGGACGGCGACGGCGTGCCCGACATCCGCGACCGCTGCCCCAACGA
GCCCGAGGACATCGACGGCTTCCAGGACGGCGACGGCTGCCCCGACCCGGACAACGACGGTGATGGCATCCCCGACGGCG
AAGATGGCTGCGCCAACGAGAAGGGCCCCAAGCACACCAAGGGCTGCCCGGACCCGAACTACGACACGGACGGCGACGGC
GTCGTCGACGGCGAGGACGCCTGCGTCGACAAGCCGGGCCCCAAGTCCAACAAGGGCTGCCCGGAGGACGAGAACGACGC
GGACGGCGACGGCATCCCCGACAAGCTCGACAAGTGCCCGGACAAGCCCGGCCCGAAGGACTACGACGGCTGCCCGGACA
CCGACGGTGACGAGGTGCCCGACAACGAGGACGACTGCCCCGAGCAGTTCGGTCCGCCGGAGAACAACGGCTGCCCGTAC
GACTCGCCGCCGTATGTCGTCGTCGAGTCCGACCGCATCCGCATCAAGGGCAACGTGCTCTTCGAGACGGGCTCCGCCGT
CATCCAGAAGCAGTCGTACCCGCTGCTGGACGAGGTGGCGACGGTGCTGCGGAAGAACCCGACGCTGGGTCCGGTCCTCA
TCGAAGGCCACACCGACAATCGCGGCTCGCGCGCCCTCAACATGGGCCTGTCCGACCGCCGCGCGAAGTCCGTGCTCGAG
TACCTGGTGGCCAAGGGCATCGCGCGCAAGCGCCTCAGCTCCAAGGGCTTCGGCTTCGACAACCCGATTGCCACCAACGA
CACGGCGCTTGGCCGCGCGAAGAACCGGCGCGTCGACTTCCGGCTCGTGCGCGCCGAGCTGGAGACGGAGAAGAAGGAGA
CCGTTGTCCCTGCGGGCCAGCCGCCGCCGCCGGGAACGACGCCGGCCAACGCGGCCCCGGACAAGGACGGCAAGCCGTAG

Upstream 100 bases:

>100_bases
CAGCAGTTCATGGAGAAATAACACACGGCTGTAATCAGCAGTGCCGGGGGGTGGGTCATTTCCTTCCACCCCCCGGAGTC
GGGTGCTATGAGCCTGAAAC

Downstream 100 bases:

>100_bases
TCCACGCGAGCTGGGGCGGAGCGCCCGTGAGGCGCCCGCCCCACTCAGCGGACGGGCGCCACCCACACCTCGCCGACCCA
GACCTGCTTGGGTGAGAAGC

Product: OmpA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 639; Mature: 639

Protein sequence:

>639_residues
MQGFSLRGSATRLAVLGLLLASVAAHADHDPFARGFDAVPVKATAAQHSGIALEGTSNALPAGSFRAALLFDFNWRILAL
KLGDEKLGDLLPYRLDAHLLFAYQLHERLELAVDLPVTLLQGDNFQLLRDALNAPNFPGAAGVGRTTLGDIRLLPRVHLL
DREQFPVGVSLVAEVRLPTGSASSFTGERGVLWAPRIALEQRFTALPVPIRVLGNVGVRLRPHAQYLNLLVDDELTLGAG
AIAELPNLGRFTDVEAVAEMHLGTPLVRPFNFDQADTLKTPWEALVGARAKVWGNWGMELNVGRGINLSSGYGREALRVM
FAVRYDETFIDSDGDGVPDIRDRCPNEPEDIDGFQDGDGCPDPDNDGDGIPDGEDGCANEKGPKHTKGCPDPNYDTDGDG
VVDGEDACVDKPGPKSNKGCPEDENDADGDGIPDKLDKCPDKPGPKDYDGCPDTDGDEVPDNEDDCPEQFGPPENNGCPY
DSPPYVVVESDRIRIKGNVLFETGSAVIQKQSYPLLDEVATVLRKNPTLGPVLIEGHTDNRGSRALNMGLSDRRAKSVLE
YLVAKGIARKRLSSKGFGFDNPIATNDTALGRAKNRRVDFRLVRAELETEKKETVVPAGQPPPPGTTPANAAPDKDGKP

Sequences:

>Translated_639_residues
MQGFSLRGSATRLAVLGLLLASVAAHADHDPFARGFDAVPVKATAAQHSGIALEGTSNALPAGSFRAALLFDFNWRILAL
KLGDEKLGDLLPYRLDAHLLFAYQLHERLELAVDLPVTLLQGDNFQLLRDALNAPNFPGAAGVGRTTLGDIRLLPRVHLL
DREQFPVGVSLVAEVRLPTGSASSFTGERGVLWAPRIALEQRFTALPVPIRVLGNVGVRLRPHAQYLNLLVDDELTLGAG
AIAELPNLGRFTDVEAVAEMHLGTPLVRPFNFDQADTLKTPWEALVGARAKVWGNWGMELNVGRGINLSSGYGREALRVM
FAVRYDETFIDSDGDGVPDIRDRCPNEPEDIDGFQDGDGCPDPDNDGDGIPDGEDGCANEKGPKHTKGCPDPNYDTDGDG
VVDGEDACVDKPGPKSNKGCPEDENDADGDGIPDKLDKCPDKPGPKDYDGCPDTDGDEVPDNEDDCPEQFGPPENNGCPY
DSPPYVVVESDRIRIKGNVLFETGSAVIQKQSYPLLDEVATVLRKNPTLGPVLIEGHTDNRGSRALNMGLSDRRAKSVLE
YLVAKGIARKRLSSKGFGFDNPIATNDTALGRAKNRRVDFRLVRAELETEKKETVVPAGQPPPPGTTPANAAPDKDGKP
>Mature_639_residues
MQGFSLRGSATRLAVLGLLLASVAAHADHDPFARGFDAVPVKATAAQHSGIALEGTSNALPAGSFRAALLFDFNWRILAL
KLGDEKLGDLLPYRLDAHLLFAYQLHERLELAVDLPVTLLQGDNFQLLRDALNAPNFPGAAGVGRTTLGDIRLLPRVHLL
DREQFPVGVSLVAEVRLPTGSASSFTGERGVLWAPRIALEQRFTALPVPIRVLGNVGVRLRPHAQYLNLLVDDELTLGAG
AIAELPNLGRFTDVEAVAEMHLGTPLVRPFNFDQADTLKTPWEALVGARAKVWGNWGMELNVGRGINLSSGYGREALRVM
FAVRYDETFIDSDGDGVPDIRDRCPNEPEDIDGFQDGDGCPDPDNDGDGIPDGEDGCANEKGPKHTKGCPDPNYDTDGDG
VVDGEDACVDKPGPKSNKGCPEDENDADGDGIPDKLDKCPDKPGPKDYDGCPDTDGDEVPDNEDDCPEQFGPPENNGCPY
DSPPYVVVESDRIRIKGNVLFETGSAVIQKQSYPLLDEVATVLRKNPTLGPVLIEGHTDNRGSRALNMGLSDRRAKSVLE
YLVAKGIARKRLSSKGFGFDNPIATNDTALGRAKNRRVDFRLVRAELETEKKETVVPAGQPPPPGTTPANAAPDKDGKP

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=105, Percent_Identity=41.9047619047619, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787191, Length=100, Percent_Identity=38, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 68770; Mature: 68770

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGFSLRGSATRLAVLGLLLASVAAHADHDPFARGFDAVPVKATAAQHSGIALEGTSNAL
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEECCCCCCEEEECCCCCC
PAGSFRAALLFDFNWRILALKLGDEKLGDLLPYRLDAHLLFAYQLHERLELAVDLPVTLL
CCCCCEEEEEEECCCEEEEEEECCHHHHHCCCEECCHHEEHHHHHHHHHHEEECCCEEEE
QGDNFQLLRDALNAPNFPGAAGVGRTTLGDIRLLPRVHLLDREQFPVGVSLVAEVRLPTG
ECCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCEEHCCCCCCCCCCEEEEEEEECCCC
SASSFTGERGVLWAPRIALEQRFTALPVPIRVLGNVGVRLRPHAQYLNLLVDDELTLGAG
CCCCCCCCCCCEECCHHHHHHHHCCCCCCHHHHCCCCEEECCHHHHHHEEECCCCCCCCC
AIAELPNLGRFTDVEAVAEMHLGTPLVRPFNFDQADTLKTPWEALVGARAKVWGNWGMEL
HHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCEEE
NVGRGINLSSGYGREALRVMFAVRYDETFIDSDGDGVPDIRDRCPNEPEDIDGFQDGDGC
ECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
PDPDNDGDGIPDGEDGCANEKGPKHTKGCPDPNYDTDGDGVVDGEDACVDKPGPKSNKGC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
PEDENDADGDGIPDKLDKCPDKPGPKDYDGCPDTDGDEVPDNEDDCPEQFGPPENNGCPY
CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
DSPPYVVVESDRIRIKGNVLFETGSAVIQKQSYPLLDEVATVLRKNPTLGPVLIEGHTDN
CCCCEEEEECCEEEEEEEEEEECCHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCC
RGSRALNMGLSDRRAKSVLEYLVAKGIARKRLSSKGFGFDNPIATNDTALGRAKNRRVDF
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCEEE
RLVRAELETEKKETVVPAGQPPPPGTTPANAAPDKDGKP
EEEEHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQGFSLRGSATRLAVLGLLLASVAAHADHDPFARGFDAVPVKATAAQHSGIALEGTSNAL
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEECCCCCCEEEECCCCCC
PAGSFRAALLFDFNWRILALKLGDEKLGDLLPYRLDAHLLFAYQLHERLELAVDLPVTLL
CCCCCEEEEEEECCCEEEEEEECCHHHHHCCCEECCHHEEHHHHHHHHHHEEECCCEEEE
QGDNFQLLRDALNAPNFPGAAGVGRTTLGDIRLLPRVHLLDREQFPVGVSLVAEVRLPTG
ECCCHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCEEHCCCCCCCCCCEEEEEEEECCCC
SASSFTGERGVLWAPRIALEQRFTALPVPIRVLGNVGVRLRPHAQYLNLLVDDELTLGAG
CCCCCCCCCCCEECCHHHHHHHHCCCCCCHHHHCCCCEEECCHHHHHHEEECCCCCCCCC
AIAELPNLGRFTDVEAVAEMHLGTPLVRPFNFDQADTLKTPWEALVGARAKVWGNWGMEL
HHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCEEE
NVGRGINLSSGYGREALRVMFAVRYDETFIDSDGDGVPDIRDRCPNEPEDIDGFQDGDGC
ECCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
PDPDNDGDGIPDGEDGCANEKGPKHTKGCPDPNYDTDGDGVVDGEDACVDKPGPKSNKGC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
PEDENDADGDGIPDKLDKCPDKPGPKDYDGCPDTDGDEVPDNEDDCPEQFGPPENNGCPY
CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
DSPPYVVVESDRIRIKGNVLFETGSAVIQKQSYPLLDEVATVLRKNPTLGPVLIEGHTDN
CCCCEEEEECCEEEEEEEEEEECCHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCC
RGSRALNMGLSDRRAKSVLEYLVAKGIARKRLSSKGFGFDNPIATNDTALGRAKNRRVDF
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCEEE
RLVRAELETEKKETVVPAGQPPPPGTTPANAAPDKDGKP
EEEEHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]