Click here to switch to the map view.

The map label for this gene is ccmF [H]

Identifier: 108759086

GI number: 108759086

Start: 3806332

End: 3808353

Strand: Reverse

Name: ccmF [H]

Synonym: MXAN_3253

Alternate gene names: 108759086

Gene position: 3808353-3806332 (Counterclockwise)

Preceding gene: 108760136

Following gene: 108758276

Centisome position: 41.67

GC content: 69.09

Gene sequence:

>2022_bases
GTGAACGGAACCGTTGGCTACGGCCTCGTGCTCGGAGGGCTCGCGTTCGCGACCTTCGGCGCACTCGTAGGCCTGGTGAG
CGGCCTGCGTCGAAGTGACGCAGGCTTCCCGTGGGTGCTGCGCGCGGTGTGGGGCTTCGCCGCCTGCATGGTGGGCTCCA
ACCTGGTGATGGTCCACGCGCTCGTCACGCACGACTTCAGCGTGCGCTACGTGGCGCAGGTGGGCAGCCGGGCCACGCCG
CTGGTCTACACCATCGTCTCGCTGTGGAGCGCCCTGGAGGGGTCCATCCTCTTTTGGGGTCTCATCATGGGCGGCTACAT
CGCCGTCTTCGCCTACATCCACCGGCGCGAGCACGCGCGGTACATGCAACTGGCGCTGGGCACCATGCTGGCGGTGGGCG
TCTTCTTCGCCTTCCTCATCGCGGGCCCGGCCAATCCCTGGGGCGCGGTGTCCCCCGTGCCAGCGGACGGCCCCGGCCCC
AACCCGCTGCTGCAGAACCACATCCTGATGGTCATCCACCCGCCCATGCTCTACCTGGGCTACGTCGGCATGACGGTGCC
CTTCGGCGTCGCGGTGGCGGGCCTGCTGCGCGGCGAGATTGGCGAAGCGTGGATGGCGCCCCTGCGGCGCTGGACGCTGG
TGGCGTGGCTCTTCCTGTCCATTGGCATCATCCTGGGCGCCTGGTGGGCCTATGCCGTGCTGGGCTGGGGCGGCTACTGG
GCGTGGGATCCGGTGGAGAACGCGTCCTTCCTACCCTGGCTGACGGCGACGGCGTTCATGCACTCCACCATGGTGCAGGA
GCGCAAGCGGATGCTGAAGCTGTGGACGCTCAGCCTCGCGCTCGCATCCTTCGTGCTCACCATCCTGGGCACGTTCATGA
CGCGCTCGGGCATCTTCAACTCGGTGCACTCGTTCACCCAGTCCGACATCGGGCCCACCTTCCTGGTGTTCCTGGGCTTC
CTGCTGGTGCTGTGCGTGGGCCTGCTGGCGGTGCGCGGTCCGCTGCTGGTGCCGGAAGGCCAGTTGGCCTCACCGCTGTC
TCGCGAGGCGAGCATCCTGGTGAACAACCTGGTGTTCGTCGCCATCACCTTCACGGTGCTGCTGGGCACGCTGTACCCGC
TCATCTCCGAGGCGGTCCGCGGCGTGCGCGTGAGCGTGGGCGAGCCGTACTTCAACAAGATGGCGGTGCCGGGCGGCATC
GCGGTGCTCTTCCTGATGGGCGTGGGCCCGGTGCTTCCCTGGGGCAAGCCGGATCCGGCCACGCTGCGCCGGCAGTTCAT
CATCCCCTCCGTGGTGGGGCTGGTGGTGACGGCGGCGTGCTTCGCGGTGGGCCTGCGCGGCGTGTACCCGCTGATGACCT
TCGGGCTGGCGGGCTTCGTCACCGTCGTCACTGTGCGGGAGTTGGTGGCGCCGGTGCGGGTGCGCATGTCCGAGCGCAAG
GAAGGCTTCGTCGCCGCGCTGACCACCAGCGCGCTCAAGGCCCAGCGCCGCTTCGGCGGCTACGTGGTGCACCTGGGCAT
CGTGCTCATCATCGTCGCGGTGGCCGCGTCCTCCGCGTACGTGAAGCACACCTCCGGCACACTGAAGAAGGGGCAGGTCA
TCGAGCTGGGCGGCTACCAGATGAAGTACCTGGGCCTGGTCAGCGGCGAGGAGCCCCACCGCACCTACGTGGCGGCGCGC
ATTGAAGTGACGTCCCCGGGCGGCAAGGTCTCCGAACTGAAGCCGCGGCTCAACTACTACGAGCGCAGCACGGACCCCAT
TGGCACCCCCGGTGTCCGGGAGACGCCGGCCGAGGACCTCTACGTGTCGCTGATGGCCTTCTCCGAGCAGGCCGGCACGG
CGAGCATCAACATCTGGGTCTTCCCGCTCGTCGGGTGGATCTGGTGGAGCATCCCCCTGCTGGTGCTGGGCACCCTCATC
GCGCTGTGGCCGCGCCGGAAGACCGCCGTGGCCATGGCGGGCGCGCCGGCGGTGGGCACGTCCCCGCTCACGGGTGGTGA
CGCCGAGCGAGGGGCCGCCTGA

Upstream 100 bases:

>100_bases
TGATGGTGAACCACTCCAACGAGTACCGCGCCCCCAAGGAGGGTGAGGATCCTCGTCAGTGGCAGGAGACGCTCTCCGAC
GCCACCGCCATGGGTGCGAA

Downstream 100 bases:

>100_bases
TGAAGGGCTGGCGCTACACGCTGGGCTTCGTGGTCCTCTGCGCGGGCCTGCTCTTCGTGTTGTTCAAGGGCTTCGGGCGC
AACCCGCACGAAGTCCCCTT

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MNGTVGYGLVLGGLAFATFGALVGLVSGLRRSDAGFPWVLRAVWGFAACMVGSNLVMVHALVTHDFSVRYVAQVGSRATP
LVYTIVSLWSALEGSILFWGLIMGGYIAVFAYIHRREHARYMQLALGTMLAVGVFFAFLIAGPANPWGAVSPVPADGPGP
NPLLQNHILMVIHPPMLYLGYVGMTVPFGVAVAGLLRGEIGEAWMAPLRRWTLVAWLFLSIGIILGAWWAYAVLGWGGYW
AWDPVENASFLPWLTATAFMHSTMVQERKRMLKLWTLSLALASFVLTILGTFMTRSGIFNSVHSFTQSDIGPTFLVFLGF
LLVLCVGLLAVRGPLLVPEGQLASPLSREASILVNNLVFVAITFTVLLGTLYPLISEAVRGVRVSVGEPYFNKMAVPGGI
AVLFLMGVGPVLPWGKPDPATLRRQFIIPSVVGLVVTAACFAVGLRGVYPLMTFGLAGFVTVVTVRELVAPVRVRMSERK
EGFVAALTTSALKAQRRFGGYVVHLGIVLIIVAVAASSAYVKHTSGTLKKGQVIELGGYQMKYLGLVSGEEPHRTYVAAR
IEVTSPGGKVSELKPRLNYYERSTDPIGTPGVRETPAEDLYVSLMAFSEQAGTASINIWVFPLVGWIWWSIPLLVLGTLI
ALWPRRKTAVAMAGAPAVGTSPLTGGDAERGAA

Sequences:

>Translated_673_residues
MNGTVGYGLVLGGLAFATFGALVGLVSGLRRSDAGFPWVLRAVWGFAACMVGSNLVMVHALVTHDFSVRYVAQVGSRATP
LVYTIVSLWSALEGSILFWGLIMGGYIAVFAYIHRREHARYMQLALGTMLAVGVFFAFLIAGPANPWGAVSPVPADGPGP
NPLLQNHILMVIHPPMLYLGYVGMTVPFGVAVAGLLRGEIGEAWMAPLRRWTLVAWLFLSIGIILGAWWAYAVLGWGGYW
AWDPVENASFLPWLTATAFMHSTMVQERKRMLKLWTLSLALASFVLTILGTFMTRSGIFNSVHSFTQSDIGPTFLVFLGF
LLVLCVGLLAVRGPLLVPEGQLASPLSREASILVNNLVFVAITFTVLLGTLYPLISEAVRGVRVSVGEPYFNKMAVPGGI
AVLFLMGVGPVLPWGKPDPATLRRQFIIPSVVGLVVTAACFAVGLRGVYPLMTFGLAGFVTVVTVRELVAPVRVRMSERK
EGFVAALTTSALKAQRRFGGYVVHLGIVLIIVAVAASSAYVKHTSGTLKKGQVIELGGYQMKYLGLVSGEEPHRTYVAAR
IEVTSPGGKVSELKPRLNYYERSTDPIGTPGVRETPAEDLYVSLMAFSEQAGTASINIWVFPLVGWIWWSIPLLVLGTLI
ALWPRRKTAVAMAGAPAVGTSPLTGGDAERGAA
>Mature_673_residues
MNGTVGYGLVLGGLAFATFGALVGLVSGLRRSDAGFPWVLRAVWGFAACMVGSNLVMVHALVTHDFSVRYVAQVGSRATP
LVYTIVSLWSALEGSILFWGLIMGGYIAVFAYIHRREHARYMQLALGTMLAVGVFFAFLIAGPANPWGAVSPVPADGPGP
NPLLQNHILMVIHPPMLYLGYVGMTVPFGVAVAGLLRGEIGEAWMAPLRRWTLVAWLFLSIGIILGAWWAYAVLGWGGYW
AWDPVENASFLPWLTATAFMHSTMVQERKRMLKLWTLSLALASFVLTILGTFMTRSGIFNSVHSFTQSDIGPTFLVFLGF
LLVLCVGLLAVRGPLLVPEGQLASPLSREASILVNNLVFVAITFTVLLGTLYPLISEAVRGVRVSVGEPYFNKMAVPGGI
AVLFLMGVGPVLPWGKPDPATLRRQFIIPSVVGLVVTAACFAVGLRGVYPLMTFGLAGFVTVVTVRELVAPVRVRMSERK
EGFVAALTTSALKAQRRFGGYVVHLGIVLIIVAVAASSAYVKHTSGTLKKGQVIELGGYQMKYLGLVSGEEPHRTYVAAR
IEVTSPGGKVSELKPRLNYYERSTDPIGTPGVRETPAEDLYVSLMAFSEQAGTASINIWVFPLVGWIWWSIPLLVLGTLI
ALWPRRKTAVAMAGAPAVGTSPLTGGDAERGAA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=621, Percent_Identity=34.621578099839, Blast_Score=297, Evalue=2e-81,
Organism=Escherichia coli, GI1790511, Length=350, Percent_Identity=39.1428571428571, Blast_Score=212, Evalue=6e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72335; Mature: 72335

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]