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The map label for this gene is sdeK [H]

Identifier: 108758841

GI number: 108758841

Start: 1182811

End: 1184352

Strand: Direct

Name: sdeK [H]

Synonym: MXAN_1014

Alternate gene names: 108758841

Gene position: 1182811-1184352 (Clockwise)

Preceding gene: 108761521

Following gene: 108763835

Centisome position: 12.94

GC content: 70.69

Gene sequence:

>1542_bases
GTGGCTCACAACGGCAGCATCGGGGGCCACGCCGACATGTCATCTGGCCGTGGAATCAACAGGTGCCAGGGCACCGAAGG
GGACGAACCTCTTTCCGAGGCGGTGGTCGTCTTGCGGAGCGTGCGCTCCGCGGTCGGCGGCATCGTCGACTTCGAGTGTG
TCTCCGCCAACGTGCAGGCGGAGCGCTGGCTCGGCGGAGAAGAGGGCAGCCTGGTGCACAACCGGCTGCTGGAGGAAGCG
CCGTGGGCGTGGGACGGCGGCCTCTTCAGTGCGTGTGTCCGCGTGGTGACACGCCGCGCGCCAGAAATCGCGCGGGTGTC
TCGGCAGTCGCCCATGGGCACCGTGTGGCTCCTGGCGCGCGTATCCCCGTGTGACGATGGCGTGGTGCTCTTCCTGGAGG
ACCTCACCGAGCGCATGGCCGCGGAAGAAGCCCTGCGGCGCGACCATGACCTGCTGCACGCCGTCATCGAGAGCGCCACC
GACGCCATCTACGTGAAGGACGTGTCGGGCCGGTACATCCTCATCAATCCCGCCACCGCGAGCGCCTTCCACCGGGCCCC
GCGCGAAATCCTGGGCCGCACGGACGCGGAGCTGCTGGGCGCCGACCGGGCCGCGCCGACGCTGGCGCACGACCGCGAGG
TGATGAGCTCCGGGCACACGGCCACGTACGAAGGGGCGGAAGGCGGCCCGGGGACGGACCGCATCTGGCACACCACGAAG
GGCGTGCTTCGCCGCGGAGACGGCACCGTGTACGGCCTGTTCGCCATCTGCCGGGACGTCACCGCGCGGCGGCGCCAGGA
ACTGGAGCGCGAGGAGGAGGCGCGCTTCCAGGAGCGCTTCATCGGCGTGCTGGGCCACGACCTGGGCAATCCATTGGCCG
CGGTGCGGCTGTCCTCCGCGGCCCTCCTGGCCCGGGACACGCTGCCCCCGGAGGTCCGGCGCGTGGTGGCTCGCATCGAC
GGGAGCGCCGAGCGGATGGCGCGGCTGGTGAAACAGTTGCTCGACTTCACGCGCGCACGCATGGCGGGTGGCATCCCGCT
GCGTCCCCATGAGGTGTGCATGGAGGACGTGTGCCGGCGCATCATCTCCGAGTTGGAGCCCGCGCATCCGGAGTGCTGCG
TCCGGCTGGAGGTGGACGGCGAGTCACGCGGCATCTGGGACGAGGAGCGCCTGGGACAGGTGCTGTCGAACCTGCTGGGC
AACGCGCTTCAACACAGTCCGGAGGGGAGCTCGGTGCGGGTGCGGCTGGCGGCGAAGGACTCGCTCTTCCAGCGCGTGGA
GGTCCACAACGGTGGGCCGCCCATCCCCGAGTCGTTGCGCCCGCGGCTCTTCTCACCGTTCCACGGGGTGCCCCCCGAGC
CGGGTCAGCCGAAGCCGAAGCACCAGGGCCTGGGGTTGGGGCTCTACATCGTGTCGCAAATCGTCACGGCGCACGGAGGC
TGGCTGGACGTGGCGTCGTCGGCGGACACGGGGACGTGCTTCTCGGTGACGCTGCCTCGCGTCACCCGGCCGTTGGGTGG
GCCGCCAGGCAAGACTGCCTGA

Upstream 100 bases:

>100_bases
CTGTCGAGCGAAACAGGAGAAATCGGAAGCTCTGGTTAGCTCGGGCACTGTTAAGCCACCCCGGGGACCGGTTGGCCCCA
CCCCCTGCTGCGGGGTTAGG

Downstream 100 bases:

>100_bases
GGCCCGGCCGGTGGCCTGCTGCTAGCGCTGGCCGAACTTCACGGCGGCCTGCAGGCGGATGACGTCCGTCAGCGCGCCCG
GGTCCACCAGCTCCATCGCC

Product: sensory box histidine kinase SdeK

Products: NA

Alternate protein names: Phytochrome-like protein [H]

Number of amino acids: Translated: 513; Mature: 512

Protein sequence:

>513_residues
MAHNGSIGGHADMSSGRGINRCQGTEGDEPLSEAVVVLRSVRSAVGGIVDFECVSANVQAERWLGGEEGSLVHNRLLEEA
PWAWDGGLFSACVRVVTRRAPEIARVSRQSPMGTVWLLARVSPCDDGVVLFLEDLTERMAAEEALRRDHDLLHAVIESAT
DAIYVKDVSGRYILINPATASAFHRAPREILGRTDAELLGADRAAPTLAHDREVMSSGHTATYEGAEGGPGTDRIWHTTK
GVLRRGDGTVYGLFAICRDVTARRRQELEREEEARFQERFIGVLGHDLGNPLAAVRLSSAALLARDTLPPEVRRVVARID
GSAERMARLVKQLLDFTRARMAGGIPLRPHEVCMEDVCRRIISELEPAHPECCVRLEVDGESRGIWDEERLGQVLSNLLG
NALQHSPEGSSVRVRLAAKDSLFQRVEVHNGGPPIPESLRPRLFSPFHGVPPEPGQPKPKHQGLGLGLYIVSQIVTAHGG
WLDVASSADTGTCFSVTLPRVTRPLGGPPGKTA

Sequences:

>Translated_513_residues
MAHNGSIGGHADMSSGRGINRCQGTEGDEPLSEAVVVLRSVRSAVGGIVDFECVSANVQAERWLGGEEGSLVHNRLLEEA
PWAWDGGLFSACVRVVTRRAPEIARVSRQSPMGTVWLLARVSPCDDGVVLFLEDLTERMAAEEALRRDHDLLHAVIESAT
DAIYVKDVSGRYILINPATASAFHRAPREILGRTDAELLGADRAAPTLAHDREVMSSGHTATYEGAEGGPGTDRIWHTTK
GVLRRGDGTVYGLFAICRDVTARRRQELEREEEARFQERFIGVLGHDLGNPLAAVRLSSAALLARDTLPPEVRRVVARID
GSAERMARLVKQLLDFTRARMAGGIPLRPHEVCMEDVCRRIISELEPAHPECCVRLEVDGESRGIWDEERLGQVLSNLLG
NALQHSPEGSSVRVRLAAKDSLFQRVEVHNGGPPIPESLRPRLFSPFHGVPPEPGQPKPKHQGLGLGLYIVSQIVTAHGG
WLDVASSADTGTCFSVTLPRVTRPLGGPPGKTA
>Mature_512_residues
AHNGSIGGHADMSSGRGINRCQGTEGDEPLSEAVVVLRSVRSAVGGIVDFECVSANVQAERWLGGEEGSLVHNRLLEEAP
WAWDGGLFSACVRVVTRRAPEIARVSRQSPMGTVWLLARVSPCDDGVVLFLEDLTERMAAEEALRRDHDLLHAVIESATD
AIYVKDVSGRYILINPATASAFHRAPREILGRTDAELLGADRAAPTLAHDREVMSSGHTATYEGAEGGPGTDRIWHTTKG
VLRRGDGTVYGLFAICRDVTARRRQELEREEEARFQERFIGVLGHDLGNPLAAVRLSSAALLARDTLPPEVRRVVARIDG
SAERMARLVKQLLDFTRARMAGGIPLRPHEVCMEDVCRRIISELEPAHPECCVRLEVDGESRGIWDEERLGQVLSNLLGN
ALQHSPEGSSVRVRLAAKDSLFQRVEVHNGGPPIPESLRPRLFSPFHGVPPEPGQPKPKHQGLGLGLYIVSQIVTAHGGW
LDVASSADTGTCFSVTLPRVTRPLGGPPGKTA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=369, Percent_Identity=26.8292682926829, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1786783, Length=225, Percent_Identity=32.8888888888889, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693157, Length=260, Percent_Identity=28.4615384615385, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1786912, Length=256, Percent_Identity=28.515625, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1789149, Length=231, Percent_Identity=26.4069264069264, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082128, Length=225, Percent_Identity=28, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1786600, Length=255, Percent_Identity=28.2352941176471, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081816, Length=248, Percent_Identity=27.8225806451613, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1790861, Length=231, Percent_Identity=29.004329004329, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790551, Length=221, Percent_Identity=31.6742081447964, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 55683; Mature: 55552

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHNGSIGGHADMSSGRGINRCQGTEGDEPLSEAVVVLRSVRSAVGGIVDFECVSANVQA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHHCCCCCH
ERWLGGEEGSLVHNRLLEEAPWAWDGGLFSACVRVVTRRAPEIARVSRQSPMGTVWLLAR
HHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEE
VSPCDDGVVLFLEDLTERMAAEEALRRDHDLLHAVIESATDAIYVKDVSGRYILINPATA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHH
SAFHRAPREILGRTDAELLGADRAAPTLAHDREVMSSGHTATYEGAEGGPGTDRIWHTTK
HHHHHCHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHH
GVLRRGDGTVYGLFAICRDVTARRRQELEREEEARFQERFIGVLGHDLGNPLAAVRLSSA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ALLARDTLPPEVRRVVARIDGSAERMARLVKQLLDFTRARMAGGIPLRPHEVCMEDVCRR
HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IISELEPAHPECCVRLEVDGESRGIWDEERLGQVLSNLLGNALQHSPEGSSVRVRLAAKD
HHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHH
SLFQRVEVHNGGPPIPESLRPRLFSPFHGVPPEPGQPKPKHQGLGLGLYIVSQIVTAHGG
HHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
WLDVASSADTGTCFSVTLPRVTRPLGGPPGKTA
CEEECCCCCCCCEEEEECHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AHNGSIGGHADMSSGRGINRCQGTEGDEPLSEAVVVLRSVRSAVGGIVDFECVSANVQA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHHCCCCCH
ERWLGGEEGSLVHNRLLEEAPWAWDGGLFSACVRVVTRRAPEIARVSRQSPMGTVWLLAR
HHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCEEEEEEE
VSPCDDGVVLFLEDLTERMAAEEALRRDHDLLHAVIESATDAIYVKDVSGRYILINPATA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHH
SAFHRAPREILGRTDAELLGADRAAPTLAHDREVMSSGHTATYEGAEGGPGTDRIWHTTK
HHHHHCHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHH
GVLRRGDGTVYGLFAICRDVTARRRQELEREEEARFQERFIGVLGHDLGNPLAAVRLSSA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ALLARDTLPPEVRRVVARIDGSAERMARLVKQLLDFTRARMAGGIPLRPHEVCMEDVCRR
HHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IISELEPAHPECCVRLEVDGESRGIWDEERLGQVLSNLLGNALQHSPEGSSVRVRLAAKD
HHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHH
SLFQRVEVHNGGPPIPESLRPRLFSPFHGVPPEPGQPKPKHQGLGLGLYIVSQIVTAHGG
HHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
WLDVASSADTGTCFSVTLPRVTRPLGGPPGKTA
CEEECCCCCCCCEEEEECHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]