| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is sppA [H]
Identifier: 108758821
GI number: 108758821
Start: 2887736
End: 2890234
Strand: Reverse
Name: sppA [H]
Synonym: MXAN_2480
Alternate gene names: 108758821
Gene position: 2890234-2887736 (Counterclockwise)
Preceding gene: 108763440
Following gene: 108757528
Centisome position: 31.62
GC content: 71.83
Gene sequence:
>2499_bases ATGCCTAGAGTCCCGGGGCGTATGCGCCTGCTCGCCCTCCTGCTCCTCCCCAGCCTCGCGCTCGCCCAGACGAGTGTCGT CAGCCAGCCCGCCCTGCCCTCCCGGGGGCTGGCGCTGCCGCCCACGGGCGCCGCGCTGGTGGATGAAGCCACCGCCCTGT CGCTCAACCCCGCGGGCCTGGGCTTCGTCAACGGCAGTCAGCTCTTCTACCTGCACGAGCGCAACCTCGTGCATGACGGC CTGGGAGACGGCGTCTTCCTGGCCACGCGCCTGCTCGGCCTGGGCCTGGGCGGCGCCATGGAGTGGATTCGCGGACGGGC GGAGCCGGACTACCGCCGCACGTCCCTGGGTCTCTCCCTGGGCACGCGCACGCTGCAGCTCGGCGGTTCGTGGCACGCCT ACGGTTCATCCCACCGGGACATCGACGCGCTGGACACCTTCGACGTGGGCCTCACGGCGCGCCCCATGCGGGCGCTGTCG CTGGGCGCGGTGGTGCGCGACATCAACGCCCCCACCGAGGGCACGCTGGCACTGAAGCGGCAGTACAACCTGGGCGTGGG CGTGCGCCCGCTGGATGAGCGCTACACGCTGGGCGTGGACTGGCTCTTCTCCGAGGGCGCCTTCCGCCAGGGCCAGGCGA CGTACACCGTCAACGCGGAGGTGATTCCGGGCCTCCGCCTGGGCGCGGGCGTGTCGCACGGCTTCACCTCCGGGGTGCCC ATCGCGCTCCAGGTGGCGGCCACGGTGGACACCTCGCACCTGGGCCTCACCTACGCGGCGGGCGGGACGAATGCGGGGCT GGACCACCTGGTGGCGGTGCGCCTGTCGTCGGAGACCTACCGCTCCATCGCGCCGCGCGGCGGCGTGGTGACGCTGCTGG ACTTGAATGACGCATTGAGCGGCGGCACCAGCCCCGTCCTCTCATGGTTGGGCGTCACCGAGGCGGACCCGTACCTGCGG CTGACGCGGTGGCTGGACCTGGCCACCCAGGACGACCGGCTGGCCGGCGTGGTGGTGAAGATGGAGAGCCTGCCCGGGGT GAGCTGGGGCAAGGCGGAGGAGCTGCGTCAGGCGCTGCTGCGGCTGCGCGCGTCCGGCAAGCGGGTGATGGCGGTGGTGC TGTCCACGGACGACCTGGGCTACTTCGTTGCCTCGGCGGCGGACCGCATCTACGCGCTGCAGGAGTCGATTCTCTACATC AACGGCCTGGCCGTGCACCTCCAGACGTACGGCGGGACGATGGAGAAGCTGGGCGTGCACTGGGACGTGGCGCGCGTGGG CCGCTTCAAGACGGCCCCGGAGCAGCTTTCCCGCACCGAGCCCAGCGACGCGTCCTTGGAGTCCACGAACGCCTACCTGG ACACGGAGGTGGCCGTCTACGAGAAAGCCGTGCAGGAGGGCCGCAAGGTGCCCGTGGAGCGGCTGCACGCGCTGTGGGCA CTGGGCCTGCCCCATCCGAAGCGCGCGGTGGAGCTGGGGTTGATGGACGGCATCATCTCCTCGACGGAGCTGGACAAGAA GGTGGCGGAGCTGGTGCCGGGTGGACGCTTCAGCACCACGTACGCGCCGCGCGACGAGCGCGACGGCCGCTGGGCCCGCC GGCGCCGCATCGCCGTGGTGCCGGTGCTGGGCGACATCATCGGCGGCCGCAGCCGCGAGGACCCGCTGGGCTTCAGCCGC CTCGCGGGCGCGGAGACAGTCATTCGCGCGCTGGAGCAGGCGCAGTCGGACCCGAGCGTGGCGGCCATCGTCGTGCGCGT GGACTCGGGCGGCGGCGAGGTGCTGGCGTCCCACCTGATGTACGAAGCCGTGATGGAGGCGGCCAAACACAAGCCCGTCG TCGCCTCCATGGGAGACATGGCCGCGTCCGGTGGCTACTACGCCGCCATTGGCGCGCACGAGGTGTTCGCCCTGCCCACC ACGCTGACGGGCAGCATCGGCGTCTTCTACATCAAGCCCGCCGTCGAGGGCCTGCTGAGCGGGCTGTTGGGCGTGCACCA GGAGAGCCTGACCCGCGCGCCGCTGGCGGACATCCTGGACGTGTGGCGCCCCTGGACGCCGGAGGAGCAGGAGGCGGCCC AGGCGTGGGCGGACGCCTCCTACGACAGCTTCATCACCGAGGTGGCGCTGCGGCGGAGGATGGACAAGGCGAAGGTGGAC GAGGTCGCCCGGGGCCGGGTGTGGAGCGGCCAGGACGCGCTCGCCCGCGGACTGGTGGACAAGCTGGGTGGCCTGCTGGA AGCGGTGGACTCCGCGCGGATGCGGGCCGGAATCCCTCCGGACGAGGAGCTGGACCTGGTGGTGATGGGCGAGGCGCGGG GCTTCTTCTCCGCGCTGGGCGGTGAGCCCGGGGTGCGCGCCGCGCTGTCCCTGCTGCCCGCACAAGAGCCCGCCCTGCCT GAGTCCCTGCGGGCGCTGGCCCGCTCGGCCGGCCTGAATCTGATGTTGCTCCAGCCGGGCGTGAAGGCGATGTTGCCCTT CCAGATAACCGTCCGCTGA
Upstream 100 bases:
>100_bases CAAGGCGCAGGACAAGAAGAGCAAGCCCGGCGACGACCCGCTCGACGGTGTGTCCGGAACCGAGGACTGGTAACGCTGAG CGCTTGTCCCGGGACGGCTG
Downstream 100 bases:
>100_bases GGTCCTGGCGGCGGCCCTGAATCAACAGGTGGGGGGTCGGCCGGACGACACCGCGCGAAAAAAGCGGCGGCGCCGTCCCC GGCCTCTGTTACTGTTACCC
Product: signal peptide peptidase SppA, 36K type
Products: NA
Alternate protein names: Endopeptidase IV; Protease IV; Signal peptide peptidase [H]
Number of amino acids: Translated: 832; Mature: 831
Protein sequence:
>832_residues MPRVPGRMRLLALLLLPSLALAQTSVVSQPALPSRGLALPPTGAALVDEATALSLNPAGLGFVNGSQLFYLHERNLVHDG LGDGVFLATRLLGLGLGGAMEWIRGRAEPDYRRTSLGLSLGTRTLQLGGSWHAYGSSHRDIDALDTFDVGLTARPMRALS LGAVVRDINAPTEGTLALKRQYNLGVGVRPLDERYTLGVDWLFSEGAFRQGQATYTVNAEVIPGLRLGAGVSHGFTSGVP IALQVAATVDTSHLGLTYAAGGTNAGLDHLVAVRLSSETYRSIAPRGGVVTLLDLNDALSGGTSPVLSWLGVTEADPYLR LTRWLDLATQDDRLAGVVVKMESLPGVSWGKAEELRQALLRLRASGKRVMAVVLSTDDLGYFVASAADRIYALQESILYI NGLAVHLQTYGGTMEKLGVHWDVARVGRFKTAPEQLSRTEPSDASLESTNAYLDTEVAVYEKAVQEGRKVPVERLHALWA LGLPHPKRAVELGLMDGIISSTELDKKVAELVPGGRFSTTYAPRDERDGRWARRRRIAVVPVLGDIIGGRSREDPLGFSR LAGAETVIRALEQAQSDPSVAAIVVRVDSGGGEVLASHLMYEAVMEAAKHKPVVASMGDMAASGGYYAAIGAHEVFALPT TLTGSIGVFYIKPAVEGLLSGLLGVHQESLTRAPLADILDVWRPWTPEEQEAAQAWADASYDSFITEVALRRRMDKAKVD EVARGRVWSGQDALARGLVDKLGGLLEAVDSARMRAGIPPDEELDLVVMGEARGFFSALGGEPGVRAALSLLPAQEPALP ESLRALARSAGLNLMLLQPGVKAMLPFQITVR
Sequences:
>Translated_832_residues MPRVPGRMRLLALLLLPSLALAQTSVVSQPALPSRGLALPPTGAALVDEATALSLNPAGLGFVNGSQLFYLHERNLVHDG LGDGVFLATRLLGLGLGGAMEWIRGRAEPDYRRTSLGLSLGTRTLQLGGSWHAYGSSHRDIDALDTFDVGLTARPMRALS LGAVVRDINAPTEGTLALKRQYNLGVGVRPLDERYTLGVDWLFSEGAFRQGQATYTVNAEVIPGLRLGAGVSHGFTSGVP IALQVAATVDTSHLGLTYAAGGTNAGLDHLVAVRLSSETYRSIAPRGGVVTLLDLNDALSGGTSPVLSWLGVTEADPYLR LTRWLDLATQDDRLAGVVVKMESLPGVSWGKAEELRQALLRLRASGKRVMAVVLSTDDLGYFVASAADRIYALQESILYI NGLAVHLQTYGGTMEKLGVHWDVARVGRFKTAPEQLSRTEPSDASLESTNAYLDTEVAVYEKAVQEGRKVPVERLHALWA LGLPHPKRAVELGLMDGIISSTELDKKVAELVPGGRFSTTYAPRDERDGRWARRRRIAVVPVLGDIIGGRSREDPLGFSR LAGAETVIRALEQAQSDPSVAAIVVRVDSGGGEVLASHLMYEAVMEAAKHKPVVASMGDMAASGGYYAAIGAHEVFALPT TLTGSIGVFYIKPAVEGLLSGLLGVHQESLTRAPLADILDVWRPWTPEEQEAAQAWADASYDSFITEVALRRRMDKAKVD EVARGRVWSGQDALARGLVDKLGGLLEAVDSARMRAGIPPDEELDLVVMGEARGFFSALGGEPGVRAALSLLPAQEPALP ESLRALARSAGLNLMLLQPGVKAMLPFQITVR >Mature_831_residues PRVPGRMRLLALLLLPSLALAQTSVVSQPALPSRGLALPPTGAALVDEATALSLNPAGLGFVNGSQLFYLHERNLVHDGL GDGVFLATRLLGLGLGGAMEWIRGRAEPDYRRTSLGLSLGTRTLQLGGSWHAYGSSHRDIDALDTFDVGLTARPMRALSL GAVVRDINAPTEGTLALKRQYNLGVGVRPLDERYTLGVDWLFSEGAFRQGQATYTVNAEVIPGLRLGAGVSHGFTSGVPI ALQVAATVDTSHLGLTYAAGGTNAGLDHLVAVRLSSETYRSIAPRGGVVTLLDLNDALSGGTSPVLSWLGVTEADPYLRL TRWLDLATQDDRLAGVVVKMESLPGVSWGKAEELRQALLRLRASGKRVMAVVLSTDDLGYFVASAADRIYALQESILYIN GLAVHLQTYGGTMEKLGVHWDVARVGRFKTAPEQLSRTEPSDASLESTNAYLDTEVAVYEKAVQEGRKVPVERLHALWAL GLPHPKRAVELGLMDGIISSTELDKKVAELVPGGRFSTTYAPRDERDGRWARRRRIAVVPVLGDIIGGRSREDPLGFSRL AGAETVIRALEQAQSDPSVAAIVVRVDSGGGEVLASHLMYEAVMEAAKHKPVVASMGDMAASGGYYAAIGAHEVFALPTT LTGSIGVFYIKPAVEGLLSGLLGVHQESLTRAPLADILDVWRPWTPEEQEAAQAWADASYDSFITEVALRRRMDKAKVDE VARGRVWSGQDALARGLVDKLGGLLEAVDSARMRAGIPPDEELDLVVMGEARGFFSALGGEPGVRAALSLLPAQEPALPE SLRALARSAGLNLMLLQPGVKAMLPFQITVR
Specific function: Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane [H]
COG id: COG0616
COG function: function code OU; Periplasmic serine proteases (ClpP class)
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S49 family [H]
Homologues:
Organism=Escherichia coli, GI1788064, Length=444, Percent_Identity=33.3333333333333, Blast_Score=194, Evalue=1e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004634 - InterPro: IPR004635 - InterPro: IPR002142 [H]
Pfam domain/function: PF01343 Peptidase_S49 [H]
EC number: 3.4.21.-
Molecular weight: Translated: 88859; Mature: 88728
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRVPGRMRLLALLLLPSLALAQTSVVSQPALPSRGLALPPTGAALVDEATALSLNPAGL CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCEEEECCCCC GFVNGSQLFYLHERNLVHDGLGDGVFLATRLLGLGLGGAMEWIRGRAEPDYRRTSLGLSL EEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHCCEE GTRTLQLGGSWHAYGSSHRDIDALDTFDVGLTARPMRALSLGAVVRDINAPTEGTLALKR CCEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE QYNLGVGVRPLDERYTLGVDWLFSEGAFRQGQATYTVNAEVIPGLRLGAGVSHGFTSGVP ECCCCCCCCCCCCCEEECEEEEECCCCCCCCCEEEEEECEECCCEEECCCCCCCCCCCCC IALQVAATVDTSHLGLTYAAGGTNAGLDHLVAVRLSSETYRSIAPRGGVVTLLDLNDALS EEEEEEEEECCCCCCEEEECCCCCCCCHHEEEEEECCHHHHHHCCCCCEEEEEECCHHCC GGTSPVLSWLGVTEADPYLRLTRWLDLATQDDRLAGVVVKMESLPGVSWGKAEELRQALL CCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHH RLRASGKRVMAVVLSTDDLGYFVASAADRIYALQESILYINGLAVHLQTYGGTMEKLGVH HHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCHHHHCCE WDVARVGRFKTAPEQLSRTEPSDASLESTNAYLDTEVAVYEKAVQEGRKVPVERLHALWA ECHHHHCCCCCCHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCCCCHHHHHHHHH LGLPHPKRAVELGLMDGIISSTELDKKVAELVPGGRFSTTYAPRDERDGRWARRRRIAVV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCEEEE PVLGDIIGGRSREDPLGFSRLAGAETVIRALEQAQSDPSVAAIVVRVDSGGGEVLASHLM EEHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHH YEAVMEAAKHKPVVASMGDMAASGGYYAAIGAHEVFALPTTLTGSIGVFYIKPAVEGLLS HHHHHHHHHCCCEEEECCCHHCCCCEEEEECCCEEEEECCCCCCCCEEEEECHHHHHHHH GLLGVHQESLTRAPLADILDVWRPWTPEEQEAAQAWADASYDSFITEVALRRRMDKAKVD HHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH EVARGRVWSGQDALARGLVDKLGGLLEAVDSARMRAGIPPDEELDLVVMGEARGFFSALG HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHC GEPGVRAALSLLPAQEPALPESLRALARSAGLNLMLLQPGVKAMLPFQITVR CCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEECCEEEEEC >Mature Secondary Structure PRVPGRMRLLALLLLPSLALAQTSVVSQPALPSRGLALPPTGAALVDEATALSLNPAGL CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCEEEECCCCC GFVNGSQLFYLHERNLVHDGLGDGVFLATRLLGLGLGGAMEWIRGRAEPDYRRTSLGLSL EEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHCCEE GTRTLQLGGSWHAYGSSHRDIDALDTFDVGLTARPMRALSLGAVVRDINAPTEGTLALKR CCEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE QYNLGVGVRPLDERYTLGVDWLFSEGAFRQGQATYTVNAEVIPGLRLGAGVSHGFTSGVP ECCCCCCCCCCCCCEEECEEEEECCCCCCCCCEEEEEECEECCCEEECCCCCCCCCCCCC IALQVAATVDTSHLGLTYAAGGTNAGLDHLVAVRLSSETYRSIAPRGGVVTLLDLNDALS EEEEEEEEECCCCCCEEEECCCCCCCCHHEEEEEECCHHHHHHCCCCCEEEEEECCHHCC GGTSPVLSWLGVTEADPYLRLTRWLDLATQDDRLAGVVVKMESLPGVSWGKAEELRQALL CCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHH RLRASGKRVMAVVLSTDDLGYFVASAADRIYALQESILYINGLAVHLQTYGGTMEKLGVH HHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCCHHHHCCE WDVARVGRFKTAPEQLSRTEPSDASLESTNAYLDTEVAVYEKAVQEGRKVPVERLHALWA ECHHHHCCCCCCHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCCCCHHHHHHHHH LGLPHPKRAVELGLMDGIISSTELDKKVAELVPGGRFSTTYAPRDERDGRWARRRRIAVV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCEEEE PVLGDIIGGRSREDPLGFSRLAGAETVIRALEQAQSDPSVAAIVVRVDSGGGEVLASHLM EEHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHH YEAVMEAAKHKPVVASMGDMAASGGYYAAIGAHEVFALPTTLTGSIGVFYIKPAVEGLLS HHHHHHHHHCCCEEEECCCHHCCCCEEEEECCCEEEEECCCCCCCCEEEEECHHHHHHHH GLLGVHQESLTRAPLADILDVWRPWTPEEQEAAQAWADASYDSFITEVALRRRMDKAKVD HHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH EVARGRVWSGQDALARGLVDKLGGLLEAVDSARMRAGIPPDEELDLVVMGEARGFFSALG HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHC GEPGVRAALSLLPAQEPALPESLRALARSAGLNLMLLQPGVKAMLPFQITVR CCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3522590; 9097039; 9278503; 7973728 [H]