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The map label for this gene is pdcA [H]

Identifier: 108758605

GI number: 108758605

Start: 643878

End: 644786

Strand: Reverse

Name: pdcA [H]

Synonym: MXAN_0560

Alternate gene names: 108758605

Gene position: 644786-643878 (Counterclockwise)

Preceding gene: 108758076

Following gene: 108757615

Centisome position: 7.05

GC content: 70.19

Gene sequence:

>909_bases
ATGGTAGCCATTGCCCGCTCCTCCGCGGCTGCGTCCAGCAGCGCGTCTCGTTCCGCCTCGCCCACGCTGCGCAGCGGAGC
GCGCGGTGCGGCCGTGACGCAACTCCAGAACAAGCTCAGGGCCGCGGGCTTCAACCCAGGCGCCTCGGATGGCGTGTTCG
GTCCGAAGACGCAGTCGGCGGTGCAAGCCTTCCAGCGTGCGCGTGGGCTCCAGGTAGACGGCATCGTCGGTCCCAAGACG
TGGAGCGCGCTCAACTCGGCGGGCGGAGCGGGCGGCTCGGGTCCCACGCTGCGCAATGGCGCGCGGGGTGAGCCGGTGCG
TGCGCTCCAGCAGCGGCTCAACGTGCTGGGCTTCAAGTCGGGCACGGCCGACGGCGTGTTCGGTCCGAAGACGCAGTCGG
CGGTGAAGGCCTTCCAGCAGTCCCGCGGTCTGGTGGCGGACGGCATCGTCGGTCCCAAGACGTGGGACAAGCTGGGCATC
AACGTGCAGGGCCCCGTCACCAACCCGGGCGGTGGCGGTGGCGGTCGGGTCGTCACGGGCTATGTGAACGGGAAGCCGCG
GCAGATTTCGCTCTCGTCGGTCCCGAACGGCAAGGAGATGCGCTCGGACGCGGCGGCGGCGTACAACCGCATGTACGCGG
CGGCGCGCGCGCAGGGCATCACCCTGAAGGTGAACAGCGGCTTCCGCAGCATGGCGGAGCAGGAAGCGCTGTACCGCGCG
TACAAGAACGGCACCGGCAACCTGGCCGCGCCTCCGGGCTACTCCAACCACCAGGGCGGCATCGCGGTGGACGTCAACAC
GGGCGGCACGGGCACCTCGACGTACCGGTGGATGGCCAACAACGCGAAGAACTTCGGCTTCGTGCGCACCGTCCCGTCCG
AGCCCTGGCACTGGGAGTACCGGCCCTGA

Upstream 100 bases:

>100_bases
TTGGATTGACACGCGTTCTTGACGGAATCCCAGGCAACTTTCTCTGAGCGGTTGGGAAAATGGATCCAACTCCATTCTTC
TTTCAAGGGAAGAGCCCCCC

Downstream 100 bases:

>100_bases
CGCAGGAGAGCGACATGAAGAAGCTGCTCATGGCGTTCGCGGTGCTGAGGTGAAGCGCCGTCGAGCCACCGCACCTTGCA
GGTACGGTGGCTCCGGACTT

Product: penicillin-resistant DD-carboxypeptidase

Products: NA

Alternate protein names: Autolysin; Cell wall hydrolase [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MVAIARSSAAASSSASRSASPTLRSGARGAAVTQLQNKLRAAGFNPGASDGVFGPKTQSAVQAFQRARGLQVDGIVGPKT
WSALNSAGGAGGSGPTLRNGARGEPVRALQQRLNVLGFKSGTADGVFGPKTQSAVKAFQQSRGLVADGIVGPKTWDKLGI
NVQGPVTNPGGGGGGRVVTGYVNGKPRQISLSSVPNGKEMRSDAAAAYNRMYAAARAQGITLKVNSGFRSMAEQEALYRA
YKNGTGNLAAPPGYSNHQGGIAVDVNTGGTGTSTYRWMANNAKNFGFVRTVPSEPWHWEYRP

Sequences:

>Translated_302_residues
MVAIARSSAAASSSASRSASPTLRSGARGAAVTQLQNKLRAAGFNPGASDGVFGPKTQSAVQAFQRARGLQVDGIVGPKT
WSALNSAGGAGGSGPTLRNGARGEPVRALQQRLNVLGFKSGTADGVFGPKTQSAVKAFQQSRGLVADGIVGPKTWDKLGI
NVQGPVTNPGGGGGGRVVTGYVNGKPRQISLSSVPNGKEMRSDAAAAYNRMYAAARAQGITLKVNSGFRSMAEQEALYRA
YKNGTGNLAAPPGYSNHQGGIAVDVNTGGTGTSTYRWMANNAKNFGFVRTVPSEPWHWEYRP
>Mature_302_residues
MVAIARSSAAASSSASRSASPTLRSGARGAAVTQLQNKLRAAGFNPGASDGVFGPKTQSAVQAFQRARGLQVDGIVGPKT
WSALNSAGGAGGSGPTLRNGARGEPVRALQQRLNVLGFKSGTADGVFGPKTQSAVKAFQQSRGLVADGIVGPKTWDKLGI
NVQGPVTNPGGGGGGRVVTGYVNGKPRQISLSSVPNGKEMRSDAAAAYNRMYAAARAQGITLKVNSGFRSMAEQEALYRA
YKNGTGNLAAPPGYSNHQGGIAVDVNTGGTGTSTYRWMANNAKNFGFVRTVPSEPWHWEYRP

Specific function: Unknown

COG id: COG3409

COG function: function code M; Putative peptidoglycan-binding domain-containing protein

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002502
- InterPro:   IPR002477 [H]

Pfam domain/function: PF01510 Amidase_2; PF01471 PG_binding_1 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 31181; Mature: 31181

Theoretical pI: Translated: 11.55; Mature: 11.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAIARSSAAASSSASRSASPTLRSGARGAAVTQLQNKLRAAGFNPGASDGVFGPKTQSA
CEEEECCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
VQAFQRARGLQVDGIVGPKTWSALNSAGGAGGSGPTLRNGARGEPVRALQQRLNVLGFKS
HHHHHHHCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCC
GTADGVFGPKTQSAVKAFQQSRGLVADGIVGPKTWDKLGINVQGPVTNPGGGGGGRVVTG
CCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCHHHCCCEEECCCCCCCCCCCCCEEEE
YVNGKPRQISLSSVPNGKEMRSDAAAAYNRMYAAARAQGITLKVNSGFRSMAEQEALYRA
EECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
YKNGTGNLAAPPGYSNHQGGIAVDVNTGGTGTSTYRWMANNAKNFGFVRTVPSEPWHWEY
HHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCC
RP
CC
>Mature Secondary Structure
MVAIARSSAAASSSASRSASPTLRSGARGAAVTQLQNKLRAAGFNPGASDGVFGPKTQSA
CEEEECCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
VQAFQRARGLQVDGIVGPKTWSALNSAGGAGGSGPTLRNGARGEPVRALQQRLNVLGFKS
HHHHHHHCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCC
GTADGVFGPKTQSAVKAFQQSRGLVADGIVGPKTWDKLGINVQGPVTNPGGGGGGRVVTG
CCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCHHHCCCEEECCCCCCCCCCCCCEEEE
YVNGKPRQISLSSVPNGKEMRSDAAAAYNRMYAAARAQGITLKVNSGFRSMAEQEALYRA
EECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
YKNGTGNLAAPPGYSNHQGGIAVDVNTGGTGTSTYRWMANNAKNFGFVRTVPSEPWHWEY
HHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCC
RP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7902527 [H]