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The map label for this gene is rcaC [H]

Identifier: 108758424

GI number: 108758424

Start: 1988224

End: 1988898

Strand: Reverse

Name: rcaC [H]

Synonym: MXAN_1680

Alternate gene names: 108758424

Gene position: 1988898-1988224 (Counterclockwise)

Preceding gene: 108762069

Following gene: 108758843

Centisome position: 21.76

GC content: 67.7

Gene sequence:

>675_bases
ATGCGAGTGCTCGTCGTCGAAGACAACCTGGACCTCCAGGCCAACATCGAGAGGTTTCTGGGGAAGGACTTCCAGCTCGA
CTTCGCCGCCACCGGGCCCCAGGGCCTCACGCTCTCGCTGGGCCAGGAATACGACGTCATCGTCCTGGACCTGATGCTGC
CGGGAATGAGTGGCATCGAGCTGTGTCAACGCTACCGGCAGCTCGCTCCCCGGCTGGTGCCCATCCTCATGCTGACCGCG
CGGGACACCCTCGATGACAAGGAAGAAGGCTTCCGCGCGGGCGCGGATGACTACCTCGTCAAGCCGTTCTCCTTGAGGGA
GCTGCGGCTGCGGCTCGAAGCCCTGGCGCGGCGCCCCGTGCCTCCGAGCGGACGGCGGCTGACGGTGGGGCCACTGACGC
TGGAGCCAGACACGGGCCAGGCACGGCGAGGCGTGCGCACCGTCCACCTCAACAAGACCGAGACGCTCCTCCTGAGGCTC
CTGATGGAGGCCGCGCCCGAGCCCGTATCGCCAGCCACGCTGGCCCACCACCTCTGGGGGGACGATGCGCCGGAGTCCAG
TGCCTTGCGCACCCACGTCTATGCCCTGCGCGGAGCACTCTCCGAGCTGGGGATGAGCGACTGCATCACCACCCTCCGCA
ACAAGGGATACCGCCTGGATGCGCGCGAGGACTAG

Upstream 100 bases:

>100_bases
AGAGGTAAGAAGCCCGGTCACCTTGCCGCCCTCCGCGTCAGCCACGCGTCAACACCCGGTTGACCTCCGGTTGACGTGGC
GGCTGATAACCTGCCCACCC

Downstream 100 bases:

>100_bases
GTCGGTCCGAGGTCTCCTCCTGGGCGCCATGGGCATGTCCGCGGCGCTCGCGCTCGTCCTGATGGGGACGTTCTTCACGC
TCTTCAGCTACGACCTCGAA

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MRVLVVEDNLDLQANIERFLGKDFQLDFAATGPQGLTLSLGQEYDVIVLDLMLPGMSGIELCQRYRQLAPRLVPILMLTA
RDTLDDKEEGFRAGADDYLVKPFSLRELRLRLEALARRPVPPSGRRLTVGPLTLEPDTGQARRGVRTVHLNKTETLLLRL
LMEAAPEPVSPATLAHHLWGDDAPESSALRTHVYALRGALSELGMSDCITTLRNKGYRLDARED

Sequences:

>Translated_224_residues
MRVLVVEDNLDLQANIERFLGKDFQLDFAATGPQGLTLSLGQEYDVIVLDLMLPGMSGIELCQRYRQLAPRLVPILMLTA
RDTLDDKEEGFRAGADDYLVKPFSLRELRLRLEALARRPVPPSGRRLTVGPLTLEPDTGQARRGVRTVHLNKTETLLLRL
LMEAAPEPVSPATLAHHLWGDDAPESSALRTHVYALRGALSELGMSDCITTLRNKGYRLDARED
>Mature_224_residues
MRVLVVEDNLDLQANIERFLGKDFQLDFAATGPQGLTLSLGQEYDVIVLDLMLPGMSGIELCQRYRQLAPRLVPILMLTA
RDTLDDKEEGFRAGADDYLVKPFSLRELRLRLEALARRPVPPSGRRLTVGPLTLEPDTGQARRGVRTVHLNKTETLLLRL
LMEAAPEPVSPATLAHHLWGDDAPESSALRTHVYALRGALSELGMSDCITTLRNKGYRLDARED

Specific function: Required for chromatic adaptation. Thought to be a positive regulator of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=38.0090497737557, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1790552, Length=226, Percent_Identity=37.6106194690265, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=31.8385650224215, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786599, Length=225, Percent_Identity=32.4444444444444, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=30.3571428571429, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787375, Length=224, Percent_Identity=30.3571428571429, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789809, Length=178, Percent_Identity=35.9550561797753, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786911, Length=208, Percent_Identity=34.1346153846154, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788394, Length=225, Percent_Identity=30.6666666666667, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=32.15859030837, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=32.15859030837, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790863, Length=154, Percent_Identity=31.8181818181818, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR008207
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01627 Hpt; PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24981; Mature: 24981

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLVVEDNLDLQANIERFLGKDFQLDFAATGPQGLTLSLGQEYDVIVLDLMLPGMSGIE
CEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCHHH
LCQRYRQLAPRLVPILMLTARDTLDDKEEGFRAGADDYLVKPFSLRELRLRLEALARRPV
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEECCCHHHHHHHHHHHHHCCCC
PPSGRRLTVGPLTLEPDTGQARRGVRTVHLNKTETLLLRLLMEAAPEPVSPATLAHHLWG
CCCCCEEEECCEEECCCCCHHHCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
DDAPESSALRTHVYALRGALSELGMSDCITTLRNKGYRLDARED
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCCC
>Mature Secondary Structure
MRVLVVEDNLDLQANIERFLGKDFQLDFAATGPQGLTLSLGQEYDVIVLDLMLPGMSGIE
CEEEEEECCCCHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCHHH
LCQRYRQLAPRLVPILMLTARDTLDDKEEGFRAGADDYLVKPFSLRELRLRLEALARRPV
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCEECCCHHHHHHHHHHHHHCCCC
PPSGRRLTVGPLTLEPDTGQARRGVRTVHLNKTETLLLRLLMEAAPEPVSPATLAHHLWG
CCCCCEEEECCEEECCCCCHHHCCEEEEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
DDAPESSALRTHVYALRGALSELGMSDCITTLRNKGYRLDARED
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1409650 [H]