Click here to switch to the map view.

The map label for this gene is rlpA [H]

Identifier: 108758400

GI number: 108758400

Start: 2978272

End: 2978775

Strand: Direct

Name: rlpA [H]

Synonym: MXAN_2558

Alternate gene names: 108758400

Gene position: 2978272-2978775 (Clockwise)

Preceding gene: 108756877

Following gene: 108762413

Centisome position: 32.59

GC content: 71.03

Gene sequence:

>504_bases
ATGCGAGGAATCGCCGTTGCCGGATTGCTCTGCTTCGGTTTCACCTCCGCGTGCGCCTCGCGCGCGGCCAGGCCCGACCC
GGTGGAGGAACCCGTCCGCCCGTCGAAGTCGCCGAAGTCCCGCAGTGGTACGCCCGGCGTGGCGCGGCGCGAGCAGATGC
CGCGCTCGTACCTGGGCGAAGGGCTGGCCTCGTTCTATGGCCCCGGCCTGCACGGGCGGCCCACCGCGAGCGGGGAGCGC
TTCGACCAGGAGGCGATGACGGCCGCGCACCGCAAGCTGCGCTTCGGCTCGTGCCTGCGCGTGGTGAACATGGAGAACGG
GCGCGCGGTGAAGGTGCGCGTGAATGACCGGGGGCCCTTCATCGACGGGCGCATCGTGGACCTGTCCAAGGGCGCCGCCC
GGAAGCTGGACATGCTGGACAAAGGCGTGGTGCGCGTCCGGCTGTACCGCTGTGCGGACCGGGTGTCGGAGATTCCGCAG
GAAATGTGGGCCGCGCCGGTGTAG

Upstream 100 bases:

>100_bases
CCTGTTCGCGTCCGCGAGGTGGCCAACATGGTGGGGCTCGCGCTGCTCGTCCTGCTGATGCTGTTGGCCGTGACCAACGA
CATCACCCGCTAGAGGACGC

Downstream 100 bases:

>100_bases
TGAGCCGTCCCATGTTCCTCTCGCTGGACACCTCGACGTTGACGTTGTCGCTGGCCCTGGTGGAGCGAGCGCCGGATGGC
GCGCTGCGCACGCTGGAGCA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRGIAVAGLLCFGFTSACASRAARPDPVEEPVRPSKSPKSRSGTPGVARREQMPRSYLGEGLASFYGPGLHGRPTASGER
FDQEAMTAAHRKLRFGSCLRVVNMENGRAVKVRVNDRGPFIDGRIVDLSKGAARKLDMLDKGVVRVRLYRCADRVSEIPQ
EMWAAPV

Sequences:

>Translated_167_residues
MRGIAVAGLLCFGFTSACASRAARPDPVEEPVRPSKSPKSRSGTPGVARREQMPRSYLGEGLASFYGPGLHGRPTASGER
FDQEAMTAAHRKLRFGSCLRVVNMENGRAVKVRVNDRGPFIDGRIVDLSKGAARKLDMLDKGVVRVRLYRCADRVSEIPQ
EMWAAPV
>Mature_167_residues
MRGIAVAGLLCFGFTSACASRAARPDPVEEPVRPSKSPKSRSGTPGVARREQMPRSYLGEGLASFYGPGLHGRPTASGER
FDQEAMTAAHRKLRFGSCLRVVNMENGRAVKVRVNDRGPFIDGRIVDLSKGAARKLDMLDKGVVRVRLYRCADRVSEIPQ
EMWAAPV

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=95, Percent_Identity=41.0526315789474, Blast_Score=78, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 18242; Mature: 18242

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGIAVAGLLCFGFTSACASRAARPDPVEEPVRPSKSPKSRSGTPGVARREQMPRSYLGE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHH
GLASFYGPGLHGRPTASGERFDQEAMTAAHRKLRFGSCLRVVNMENGRAVKVRVNDRGPF
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCCE
IDGRIVDLSKGAARKLDMLDKGVVRVRLYRCADRVSEIPQEMWAAPV
ECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRGIAVAGLLCFGFTSACASRAARPDPVEEPVRPSKSPKSRSGTPGVARREQMPRSYLGE
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHH
GLASFYGPGLHGRPTASGERFDQEAMTAAHRKLRFGSCLRVVNMENGRAVKVRVNDRGPF
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCCCCE
IDGRIVDLSKGAARKLDMLDKGVVRVRLYRCADRVSEIPQEMWAAPV
ECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]