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The map label for this gene is deoC [H]

Identifier: 108758066

GI number: 108758066

Start: 7087137

End: 7087820

Strand: Reverse

Name: deoC [H]

Synonym: MXAN_5719

Alternate gene names: 108758066

Gene position: 7087820-7087137 (Counterclockwise)

Preceding gene: 108761942

Following gene: 108761287

Centisome position: 77.55

GC content: 71.93

Gene sequence:

>684_bases
ATGGACACGGTGCGCTCCCACGCGGACCTGGCGCCGTACATCGACCACACGCTGCTCAAGCCCGAGGCTCGCGCCGAGGA
CGTGGTGAAGTTGGCCGAGGAGGCCCGCCAGTACGGCTTCGCCACCGTCTGCGTGAACAGCACGCACGTGGCCACCGCGG
CGCGGGTGCTGGCCGGCTCGTCCACGGTGCCCATCGCCGTGGTGGGTTTCCCGCTGGGCGCCTCGCTGCCGTCCGCCAAG
GCCTTCGAGGCCCGGGAGTCCATCCGCGCCGGGGCGCGGGAAATCGACATGGTGCTGAACGTCGGCGCGCTCAAGGCGCA
CGACTACGCGCTGGTGCACCAGGACATCGCCGCCGTCGTGGAGGCCAGCCGGCCCGTGCCGGTGAAGGTCATCCTGGAGA
CGGCCCTGCTGACGGACGAGGAGAAGGTCATCGCCTGCTCGCTCTCCAAGGCCGCGGGCGCCGCCTTCGTGAAGACGTCC
ACGGGCTTCGGTCCGGGCGGGGCCACCGAGGCGGACGTGGCGCTGATGCGCCGGGTGGTGGGCGACACGGTGGGCGTGAA
GGCGTCGGGCGGCATCCGCTCCGCCGAGGACGCGATGAAGATGCTGCGCGCGGGGGCCAACCGTGTGGGTGCGTCCGCGT
CGGTGGCCATCGTCTCCGGGCAGACCTCCTCCGCGAAGTACTGA

Upstream 100 bases:

>100_bases
CATTGCCAACCAGGCGCGCCGCCGGCTCGAGGCGTGGAAGGAGGGGCAGACGCCCGGGGCCCGTGCTCCCGCGTCGGGCC
CGTCCACCGCCCGGGTGGCC

Downstream 100 bases:

>100_bases
CCCGGGGCGGACACCGTGAACGCGAAACAGCGAGACGAGCTCAAGGCGCTGCTGCTCGCGCTCCACTCGGAGCTGACGGA
CAAGACGCCGTCGAGAATCG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MDTVRSHADLAPYIDHTLLKPEARAEDVVKLAEEARQYGFATVCVNSTHVATAARVLAGSSTVPIAVVGFPLGASLPSAK
AFEARESIRAGAREIDMVLNVGALKAHDYALVHQDIAAVVEASRPVPVKVILETALLTDEEKVIACSLSKAAGAAFVKTS
TGFGPGGATEADVALMRRVVGDTVGVKASGGIRSAEDAMKMLRAGANRVGASASVAIVSGQTSSAKY

Sequences:

>Translated_227_residues
MDTVRSHADLAPYIDHTLLKPEARAEDVVKLAEEARQYGFATVCVNSTHVATAARVLAGSSTVPIAVVGFPLGASLPSAK
AFEARESIRAGAREIDMVLNVGALKAHDYALVHQDIAAVVEASRPVPVKVILETALLTDEEKVIACSLSKAAGAAFVKTS
TGFGPGGATEADVALMRRVVGDTVGVKASGGIRSAEDAMKMLRAGANRVGASASVAIVSGQTSSAKY
>Mature_227_residues
MDTVRSHADLAPYIDHTLLKPEARAEDVVKLAEEARQYGFATVCVNSTHVATAARVLAGSSTVPIAVVGFPLGASLPSAK
AFEARESIRAGAREIDMVLNVGALKAHDYALVHQDIAAVVEASRPVPVKVILETALLTDEEKVIACSLSKAAGAAFVKTS
TGFGPGGATEADVALMRRVVGDTVGVKASGGIRSAEDAMKMLRAGANRVGASASVAIVSGQTSSAKY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=189, Percent_Identity=31.7460317460317, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1790841, Length=214, Percent_Identity=34.1121495327103, Blast_Score=72, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17533015, Length=205, Percent_Identity=31.219512195122, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23342; Mature: 23342

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTVRSHADLAPYIDHTLLKPEARAEDVVKLAEEARQYGFATVCVNSTHVATAARVLAGS
CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCC
STVPIAVVGFPLGASLPSAKAFEARESIRAGAREIDMVLNVGALKAHDYALVHQDIAAVV
CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
EASRPVPVKVILETALLTDEEKVIACSLSKAAGAAFVKTSTGFGPGGATEADVALMRRVV
HCCCCCCHHHHHHHHHHCCCCCEEEEECCHHCCEEEEEECCCCCCCCCCHHHHHHHHHHH
GDTVGVKASGGIRSAEDAMKMLRAGANRVGASASVAIVSGQTSSAKY
CCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MDTVRSHADLAPYIDHTLLKPEARAEDVVKLAEEARQYGFATVCVNSTHVATAARVLAGS
CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCC
STVPIAVVGFPLGASLPSAKAFEARESIRAGAREIDMVLNVGALKAHDYALVHQDIAAVV
CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
EASRPVPVKVILETALLTDEEKVIACSLSKAAGAAFVKTSTGFGPGGATEADVALMRRVV
HCCCCCCHHHHHHHHHHCCCCCEEEEECCHHCCEEEEEECCCCCCCCCCHHHHHHHHHHH
GDTVGVKASGGIRSAEDAMKMLRAGANRVGASASVAIVSGQTSSAKY
CCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA