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The map label for this gene is rbfA

Identifier: 108757332

GI number: 108757332

Start: 2402655

End: 2403014

Strand: Direct

Name: rbfA

Synonym: MXAN_2070

Alternate gene names: 108757332

Gene position: 2402655-2403014 (Clockwise)

Preceding gene: 108761698

Following gene: 108758349

Centisome position: 26.29

GC content: 63.61

Gene sequence:

>360_bases
ATGACGACGCATTCCCGACCGGAGCGCGTGGGGCAGGAAATCCAGGCGGCCATCGGTGACTTGCTCACCCGGGGCATGCT
GAGGGATCCGCGCATCGGCTACATCACGATTACAGGCGTGAAGGTCTCCCCGGACCTTCGCGTGGCCCGTGTCTTCTATT
CGATGATGGGCAACGAGCAGGAGCGGGCGGACACGCAGAAGGGCCTGGAAGCCGCCAAGGGCTTCGTGCGCCGCGAGGTG
ACGTCCGCCGTCAACCTGCGCGTGTCGCCGGAAATCTTCTTCTCCTTCGACGAATCGGTGGGCGAAGGTGACAAGATTGA
CCGGCTGCTGCGCGAAGTCCGCAACAAGGAAGGCTGGTAG

Upstream 100 bases:

>100_bases
GCACGAGCCGCCCGTCTCCGTCGAGCGGTGGACGGATGACGTTCGACGAGGCACGGGCTCGGGCCCGTTCCCTGCGCAAC
CCGCGAGACTGGGAGAAGAA

Downstream 100 bases:

>100_bases
GTCCAGCTCCGGGCCTCCACGATTGGCGTGCCATGGACGGCGTCCTCGTCATTGACAAGCCCACCGGTCCCACGTCGTTC
GACGTGGTCCGCCAGGTGCG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 118

Protein sequence:

>119_residues
MTTHSRPERVGQEIQAAIGDLLTRGMLRDPRIGYITITGVKVSPDLRVARVFYSMMGNEQERADTQKGLEAAKGFVRREV
TSAVNLRVSPEIFFSFDESVGEGDKIDRLLREVRNKEGW

Sequences:

>Translated_119_residues
MTTHSRPERVGQEIQAAIGDLLTRGMLRDPRIGYITITGVKVSPDLRVARVFYSMMGNEQERADTQKGLEAAKGFVRREV
TSAVNLRVSPEIFFSFDESVGEGDKIDRLLREVRNKEGW
>Mature_118_residues
TTHSRPERVGQEIQAAIGDLLTRGMLRDPRIGYITITGVKVSPDLRVARVFYSMMGNEQERADTQKGLEAAKGFVRREVT
SAVNLRVSPEIFFSFDESVGEGDKIDRLLREVRNKEGW

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=111, Percent_Identity=37.8378378378378, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_MYXXD (Q1DAM4)

Other databases:

- EMBL:   CP000113
- RefSeq:   YP_630299.1
- ProteinModelPortal:   Q1DAM4
- SMR:   Q1DAM4
- STRING:   Q1DAM4
- GeneID:   4101149
- GenomeReviews:   CP000113_GR
- KEGG:   mxa:MXAN_2070
- TIGR:   MXAN_2070
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   QMRRAPE
- PhylomeDB:   Q1DAM4
- BioCyc:   MXAN246197:MXAN_2070-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13456; Mature: 13324

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTHSRPERVGQEIQAAIGDLLTRGMLRDPRIGYITITGVKVSPDLRVARVFYSMMGNEQ
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECEEECCCHHHHHHHHHHHCCCH
ERADTQKGLEAAKGFVRREVTSAVNLRVSPEIFFSFDESVGEGDKIDRLLREVRNKEGW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTHSRPERVGQEIQAAIGDLLTRGMLRDPRIGYITITGVKVSPDLRVARVFYSMMGNEQ
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECEEECCCHHHHHHHHHHHCCCH
ERADTQKGLEAAKGFVRREVTSAVNLRVSPEIFFSFDESVGEGDKIDRLLREVRNKEGW
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA