Click here to switch to the map view.

The map label for this gene is ydiF [H]

Identifier: 108757272

GI number: 108757272

Start: 719871

End: 721493

Strand: Direct

Name: ydiF [H]

Synonym: MXAN_0622

Alternate gene names: 108757272

Gene position: 719871-721493 (Clockwise)

Preceding gene: 108760784

Following gene: 108762770

Centisome position: 7.88

GC content: 67.47

Gene sequence:

>1623_bases
ATGATTCGTCTCGACAACATCAGCAAGCAGAACGGCCAGCAGATTCTCTTCATCGAGGCCTCCGCGGCGCTCCACAAGGG
GGAGAAGGTGGGCCTCGTCGGACCCAACGGGGCCGGCAAGACGACGCTGTTCCGGATGATTACCAGCCAGGAGCACCCCG
ACGAGGGCCAGGTCGCCGTCGACCGGGGCGTCACCATTGGCTACTTCAGCCAGGACGTGGGTGAGATGGAGGGCCGCAGC
GCCGCCGCCGAGGTGATGGACGGCGCGGGCCCGGTCAGCACGGTGGCCGCCGAGCTGAAGGAGCTGGAGGCCGCCATGGC
CGACCCGGACCAGGCGGACAACATGGACAAGCTCGTGGAGCGCTACGGCCTGGTCCAGGGGCGCTTCGAGGAGCTGGGTG
GCTACGCGCTGGAAGGCCGCGCGCGGGAGATTCTCGCGGGCCTGGGCTTCACCCAGGAGATGATGGACGGCGACGTGGGC
GCGCTGTCGGGTGGTTGGAAGATGCGCGTGGCGCTGGCCCGCATCCTCCTGATGCGTCCGGACGCGATGCTGCTCGACGA
GCCGAGCAACCATCTCGACATCGAGAGCCTCATCTGGCTGGAGGAGTTCCTCAAGAACTACGACGGCGCGCTGCTGATGA
CGTCGCACGACCGCGAGTTCATGAACCGCATCGTGAACAAGGTGGTGGAGATCGACGGCGGCTCGCTGTCGACGTACACC
GGCAACTACGAGTTCTACGAGCAGCAGCGGGCGATGAACGAGAAGCAGCAGCAGGCGCAGTTCGAGCGCCAGCAGGCCAT
GCTCGCCAAGGAGCTGAAGTTCATCGAGCGCTTCAAGGCGCGCGCCTCGCACGCCGCGCAGGTGCAGAGCCGGGTGAAGA
AGCTGGAGAAGATTGAGCGCGTGGAGCCGCCCAAGCGGCGTCAGACGGTGCTCTTCGAGTTCCAGCCGGCGCCGCGCTCG
GGCGACGACGTGGTGAGCCTGAAGGGCGTTCACAAGGCCTACGGCTCGCGGACCATCTACGAGGGGCTGGACTTCCTGGT
GCGCCGCACGGAGCGCTGGGCCGTCATGGGCGTCAACGGCGCGGGCAAGTCCACGCTGCTGAAGCTGGTGACGGGCTCCA
CGCAGCCGGACACGGGCAACGTGGCGCTGGGTGGCAGCGTGAAGATGGGTTACTTCGCGCAGCACGCCATGGACCTGCTG
GACGGCGAGCGGACCGTGTTCCAGGCGCTGGAGGACGCCTTCCCCCGCGCGGGTCAGGGCTCGCTGCGGGCGCTGGCCGG
CTGCTTCGGCTTCTCCGGCGACGAGGTGGAGAAGAAGTGCCGCGTGCTGTCCGGTGGTGAGAAGGCCCGGCTCGTCATGG
CGAAGATGCTCTTCGACCCGCCGAACTTCCTGGTGCTGGACGAGCCCACCAACCACCTGGACATGGCCACGAAGGAGATG
CTGATTACGGCGCTCTCCCGCTACGAGGGGACGATGCTGTTCGTCTCCCACGACCGTCACTTCCTGGCCGCGCTGTCCAA
CCGCGTGCTGGAGCTGACGCCCGAGGGCATCCACCAGTACGGCGGCGGCTACACGGAGTACGTCGCGCGCACCGGCCAGG
AAGCGCCCGGTCTGCGGAGCTGA

Upstream 100 bases:

>100_bases
ATGCAAGAGAAGTCGCTTCCCAAGGGTTCGGAACATTCTTTCTGGGGCGGGCTACGTGGCATAAGGGCGCCGCACCCGCT
TTCGGGCCCCCCGCACGCAC

Downstream 100 bases:

>100_bases
AGCACCGCAAGGGGCCCGGCGTCCGCCGGGCACGTCGCGCTTCACGGCGGCTCAGCGCTCCACGTGGCCCTGGGCCGTCA
GGGCGCTTCGCAGCGCCCGC

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MIRLDNISKQNGQQILFIEASAALHKGEKVGLVGPNGAGKTTLFRMITSQEHPDEGQVAVDRGVTIGYFSQDVGEMEGRS
AAAEVMDGAGPVSTVAAELKELEAAMADPDQADNMDKLVERYGLVQGRFEELGGYALEGRAREILAGLGFTQEMMDGDVG
ALSGGWKMRVALARILLMRPDAMLLDEPSNHLDIESLIWLEEFLKNYDGALLMTSHDREFMNRIVNKVVEIDGGSLSTYT
GNYEFYEQQRAMNEKQQQAQFERQQAMLAKELKFIERFKARASHAAQVQSRVKKLEKIERVEPPKRRQTVLFEFQPAPRS
GDDVVSLKGVHKAYGSRTIYEGLDFLVRRTERWAVMGVNGAGKSTLLKLVTGSTQPDTGNVALGGSVKMGYFAQHAMDLL
DGERTVFQALEDAFPRAGQGSLRALAGCFGFSGDEVEKKCRVLSGGEKARLVMAKMLFDPPNFLVLDEPTNHLDMATKEM
LITALSRYEGTMLFVSHDRHFLAALSNRVLELTPEGIHQYGGGYTEYVARTGQEAPGLRS

Sequences:

>Translated_540_residues
MIRLDNISKQNGQQILFIEASAALHKGEKVGLVGPNGAGKTTLFRMITSQEHPDEGQVAVDRGVTIGYFSQDVGEMEGRS
AAAEVMDGAGPVSTVAAELKELEAAMADPDQADNMDKLVERYGLVQGRFEELGGYALEGRAREILAGLGFTQEMMDGDVG
ALSGGWKMRVALARILLMRPDAMLLDEPSNHLDIESLIWLEEFLKNYDGALLMTSHDREFMNRIVNKVVEIDGGSLSTYT
GNYEFYEQQRAMNEKQQQAQFERQQAMLAKELKFIERFKARASHAAQVQSRVKKLEKIERVEPPKRRQTVLFEFQPAPRS
GDDVVSLKGVHKAYGSRTIYEGLDFLVRRTERWAVMGVNGAGKSTLLKLVTGSTQPDTGNVALGGSVKMGYFAQHAMDLL
DGERTVFQALEDAFPRAGQGSLRALAGCFGFSGDEVEKKCRVLSGGEKARLVMAKMLFDPPNFLVLDEPTNHLDMATKEM
LITALSRYEGTMLFVSHDRHFLAALSNRVLELTPEGIHQYGGGYTEYVARTGQEAPGLRS
>Mature_540_residues
MIRLDNISKQNGQQILFIEASAALHKGEKVGLVGPNGAGKTTLFRMITSQEHPDEGQVAVDRGVTIGYFSQDVGEMEGRS
AAAEVMDGAGPVSTVAAELKELEAAMADPDQADNMDKLVERYGLVQGRFEELGGYALEGRAREILAGLGFTQEMMDGDVG
ALSGGWKMRVALARILLMRPDAMLLDEPSNHLDIESLIWLEEFLKNYDGALLMTSHDREFMNRIVNKVVEIDGGSLSTYT
GNYEFYEQQRAMNEKQQQAQFERQQAMLAKELKFIERFKARASHAAQVQSRVKKLEKIERVEPPKRRQTVLFEFQPAPRS
GDDVVSLKGVHKAYGSRTIYEGLDFLVRRTERWAVMGVNGAGKSTLLKLVTGSTQPDTGNVALGGSVKMGYFAQHAMDLL
DGERTVFQALEDAFPRAGQGSLRALAGCFGFSGDEVEKKCRVLSGGEKARLVMAKMLFDPPNFLVLDEPTNHLDMATKEM
LITALSRYEGTMLFVSHDRHFLAALSNRVLELTPEGIHQYGGGYTEYVARTGQEAPGLRS

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=534, Percent_Identity=33.8951310861423, Blast_Score=292, Evalue=6e-79,
Organism=Homo sapiens, GI10947137, Length=536, Percent_Identity=33.3955223880597, Blast_Score=263, Evalue=2e-70,
Organism=Homo sapiens, GI27881506, Length=551, Percent_Identity=33.2123411978221, Blast_Score=263, Evalue=3e-70,
Organism=Homo sapiens, GI69354671, Length=538, Percent_Identity=31.9702602230483, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI10947135, Length=538, Percent_Identity=31.9702602230483, Blast_Score=221, Evalue=1e-57,
Organism=Escherichia coli, GI1789751, Length=527, Percent_Identity=36.4326375711575, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1787041, Length=539, Percent_Identity=34.8794063079777, Blast_Score=337, Evalue=1e-93,
Organism=Escherichia coli, GI2367384, Length=517, Percent_Identity=33.8491295938104, Blast_Score=284, Evalue=8e-78,
Organism=Escherichia coli, GI1787182, Length=542, Percent_Identity=34.8708487084871, Blast_Score=257, Evalue=1e-69,
Organism=Escherichia coli, GI87081782, Length=523, Percent_Identity=24.6653919694073, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788165, Length=215, Percent_Identity=32.093023255814, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787758, Length=212, Percent_Identity=26.8867924528302, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788225, Length=245, Percent_Identity=26.1224489795918, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1789873, Length=230, Percent_Identity=28.2608695652174, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787164, Length=193, Percent_Identity=32.1243523316062, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=24.1379310344828, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=30.8457711442786, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=535, Percent_Identity=34.5794392523364, Blast_Score=285, Evalue=6e-77,
Organism=Caenorhabditis elegans, GI17559834, Length=547, Percent_Identity=30.5301645338208, Blast_Score=273, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI17555318, Length=522, Percent_Identity=31.992337164751, Blast_Score=267, Evalue=1e-71,
Organism=Caenorhabditis elegans, GI71983523, Length=284, Percent_Identity=26.056338028169, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=284, Percent_Identity=26.056338028169, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=284, Percent_Identity=26.056338028169, Blast_Score=70, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320874, Length=539, Percent_Identity=30.9833024118738, Blast_Score=273, Evalue=5e-74,
Organism=Saccharomyces cerevisiae, GI6321121, Length=542, Percent_Identity=30.0738007380074, Blast_Score=272, Evalue=1e-73,
Organism=Saccharomyces cerevisiae, GI6325030, Length=403, Percent_Identity=29.7766749379653, Blast_Score=130, Evalue=6e-31,
Organism=Saccharomyces cerevisiae, GI6323278, Length=387, Percent_Identity=27.1317829457364, Blast_Score=130, Evalue=8e-31,
Organism=Saccharomyces cerevisiae, GI6324314, Length=386, Percent_Identity=27.2020725388601, Blast_Score=128, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24666836, Length=530, Percent_Identity=34.1509433962264, Blast_Score=311, Evalue=9e-85,
Organism=Drosophila melanogaster, GI24642252, Length=514, Percent_Identity=32.1011673151751, Blast_Score=271, Evalue=6e-73,
Organism=Drosophila melanogaster, GI18859989, Length=514, Percent_Identity=32.1011673151751, Blast_Score=271, Evalue=6e-73,
Organism=Drosophila melanogaster, GI24641342, Length=539, Percent_Identity=30.0556586270872, Blast_Score=263, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 59631; Mature: 59631

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLDNISKQNGQQILFIEASAALHKGEKVGLVGPNGAGKTTLFRMITSQEHPDEGQVAV
CCCCCCCCCCCCCEEEEEECHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
DRGVTIGYFSQDVGEMEGRSAAAEVMDGAGPVSTVAAELKELEAAMADPDQADNMDKLVE
ECCCEEEEHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RYGLVQGRFEELGGYALEGRAREILAGLGFTQEMMDGDVGALSGGWKMRVALARILLMRP
HHCCCCCHHHHHCCEEECCHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
DAMLLDEPSNHLDIESLIWLEEFLKNYDGALLMTSHDREFMNRIVNKVVEIDGGSLSTYT
CCCEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHEECCCCCEEEEE
GNYEFYEQQRAMNEKQQQAQFERQQAMLAKELKFIERFKARASHAAQVQSRVKKLEKIER
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEPPKRRQTVLFEFQPAPRSGDDVVSLKGVHKAYGSRTIYEGLDFLVRRTERWAVMGVNG
CCCCCHHCEEEEEECCCCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECC
AGKSTLLKLVTGSTQPDTGNVALGGSVKMGYFAQHAMDLLDGERTVFQALEDAFPRAGQG
CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
SLRALAGCFGFSGDEVEKKCRVLSGGEKARLVMAKMLFDPPNFLVLDEPTNHLDMATKEM
HHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
LITALSRYEGTMLFVSHDRHFLAALSNRVLELTPEGIHQYGGGYTEYVARTGQEAPGLRS
HHHHHHHCCCEEEEEECCCHHHHHHHCCCEEECHHHHHHHCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIRLDNISKQNGQQILFIEASAALHKGEKVGLVGPNGAGKTTLFRMITSQEHPDEGQVAV
CCCCCCCCCCCCCEEEEEECHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
DRGVTIGYFSQDVGEMEGRSAAAEVMDGAGPVSTVAAELKELEAAMADPDQADNMDKLVE
ECCCEEEEHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
RYGLVQGRFEELGGYALEGRAREILAGLGFTQEMMDGDVGALSGGWKMRVALARILLMRP
HHCCCCCHHHHHCCEEECCHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
DAMLLDEPSNHLDIESLIWLEEFLKNYDGALLMTSHDREFMNRIVNKVVEIDGGSLSTYT
CCCEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHEECCCCCEEEEE
GNYEFYEQQRAMNEKQQQAQFERQQAMLAKELKFIERFKARASHAAQVQSRVKKLEKIER
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEPPKRRQTVLFEFQPAPRSGDDVVSLKGVHKAYGSRTIYEGLDFLVRRTERWAVMGVNG
CCCCCHHCEEEEEECCCCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECC
AGKSTLLKLVTGSTQPDTGNVALGGSVKMGYFAQHAMDLLDGERTVFQALEDAFPRAGQG
CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
SLRALAGCFGFSGDEVEKKCRVLSGGEKARLVMAKMLFDPPNFLVLDEPTNHLDMATKEM
HHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH
LITALSRYEGTMLFVSHDRHFLAALSNRVLELTPEGIHQYGGGYTEYVARTGQEAPGLRS
HHHHHHHCCCEEEEEECCCHHHHHHHCCCEEECHHHHHHHCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]