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The map label for this gene is rtcB [C]

Identifier: 108757268

GI number: 108757268

Start: 1451139

End: 1452296

Strand: Reverse

Name: rtcB [C]

Synonym: MXAN_1238

Alternate gene names: 108757268

Gene position: 1452296-1451139 (Counterclockwise)

Preceding gene: 108763853

Following gene: 108761114

Centisome position: 15.89

GC content: 69.86

Gene sequence:

>1158_bases
ATGCGCACTGACGCCTCCTCTGAACATCTCCCCACTTCCGCGCCGCAGGCGCCCGTGCGTGTCATCGCCTCCGCCCAGTC
CTGGGTGGAAGGCGAGGCGGTGCGGCAACTCGAAGCCATGGCCCGCTTGCCAGGAATGAAGCTGGCGGTGGGCCTCCCGG
ACCTGCATCCCGGCAAGGGTGCTCCGGTGGGCGCGGCCTTCACCTCCGAAGGCTTTCTCTATCCCTATCTGGTCGGCAGT
GACATCGGCTGTGGCATGGGCCTGTGGAACGTGGACCTGCTGGCACGTAAAGCCAAGCCCGAGCGTTGGGCAGGCAAGTT
GGACCTGGAAGGCCCGTGGACAGGTGACACGGAAGGCTTCCTCCAGGAGCACGGCGTGAAGTCCTCGGGCTACGAGGCCG
CGCTGGGCACGGTGGGCGGCGGCAACCACTTCGCGGAGTTGCAGCGGGTGGACGCGGTCCATGACGCGAAGGTCTTCAGC
GCCCTGGGCCTGGAGGCGGACCGCTTGCTGCTCCTGGTGCACTCCGGCTCGCGCGGCCTGGGTGAAGCGATTCTCCGGGC
CCATGTGGACCGGCACGCGGCGGGCGGCCTCGCGGACGACTCATCCGAGGCGCAGACCTACCTCACGCGCCATGACCACG
CGGTGGCCTGGGGCCGGGCCAATCGGGCCCTGGTGGCGCGGCGGATGCTGGACGGCATCGGCGCGATGGGCCAGCGAGTC
CTCGACGTGTGCCACAACAGTGTCACCCCTCGGCGTGACACGGGACGGACGCAGTGGCTGCACCGCAAGGGCGCGGCGCC
GTCCGACGAAGGGCCGGTGGTGATTCCCGGCAGCCGCGGCGCACTGAGCTACCTGGTGATTCCAACCGGGGAGAGCCACG
CCAGCGCGCACAGCCTGGCGCACGGCGCGGGCCGCAAGTGGACACGCACGGCCGCCCGGGAACGGATGCGCGAACGCTTC
ACGGCGGAATCACTCACCCGCACCGCCTTCAAGAGCCACGTGGTGTGTGAGAACAAGGACCTCCTCTTCGAGGAGGCGCC
GCCCGCGTACAAGCCCATCGACCGCGTGGTGACGGACCTGGTGGAAGCGGGGCTGGTCCGAGTGGTGGCCACCCTGGCGC
CCGTCCTCACGTACAAGACGCGCGCCCGGCCGGAGTAG

Upstream 100 bases:

>100_bases
GTTCACCATCCTCAAGGGCGAGCCGTACCACAAGTAGGCGGCCGGGCACGGGGCCCGGCGCCACCGTCAGGCGTGGCGCG
CGGGTGCCGTCAGCCCGGGC

Downstream 100 bases:

>100_bases
GGTCCCCGTATGCAGCCTTTCCTCGAACCAGACTCCCCGCGAGTGCGCTCCGCCATGGAAGCCAATCAGGTGGAGCACAT
GACCTATCTGGCGCGAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MRTDASSEHLPTSAPQAPVRVIASAQSWVEGEAVRQLEAMARLPGMKLAVGLPDLHPGKGAPVGAAFTSEGFLYPYLVGS
DIGCGMGLWNVDLLARKAKPERWAGKLDLEGPWTGDTEGFLQEHGVKSSGYEAALGTVGGGNHFAELQRVDAVHDAKVFS
ALGLEADRLLLLVHSGSRGLGEAILRAHVDRHAAGGLADDSSEAQTYLTRHDHAVAWGRANRALVARRMLDGIGAMGQRV
LDVCHNSVTPRRDTGRTQWLHRKGAAPSDEGPVVIPGSRGALSYLVIPTGESHASAHSLAHGAGRKWTRTAARERMRERF
TAESLTRTAFKSHVVCENKDLLFEEAPPAYKPIDRVVTDLVEAGLVRVVATLAPVLTYKTRARPE

Sequences:

>Translated_385_residues
MRTDASSEHLPTSAPQAPVRVIASAQSWVEGEAVRQLEAMARLPGMKLAVGLPDLHPGKGAPVGAAFTSEGFLYPYLVGS
DIGCGMGLWNVDLLARKAKPERWAGKLDLEGPWTGDTEGFLQEHGVKSSGYEAALGTVGGGNHFAELQRVDAVHDAKVFS
ALGLEADRLLLLVHSGSRGLGEAILRAHVDRHAAGGLADDSSEAQTYLTRHDHAVAWGRANRALVARRMLDGIGAMGQRV
LDVCHNSVTPRRDTGRTQWLHRKGAAPSDEGPVVIPGSRGALSYLVIPTGESHASAHSLAHGAGRKWTRTAARERMRERF
TAESLTRTAFKSHVVCENKDLLFEEAPPAYKPIDRVVTDLVEAGLVRVVATLAPVLTYKTRARPE
>Mature_385_residues
MRTDASSEHLPTSAPQAPVRVIASAQSWVEGEAVRQLEAMARLPGMKLAVGLPDLHPGKGAPVGAAFTSEGFLYPYLVGS
DIGCGMGLWNVDLLARKAKPERWAGKLDLEGPWTGDTEGFLQEHGVKSSGYEAALGTVGGGNHFAELQRVDAVHDAKVFS
ALGLEADRLLLLVHSGSRGLGEAILRAHVDRHAAGGLADDSSEAQTYLTRHDHAVAWGRANRALVARRMLDGIGAMGQRV
LDVCHNSVTPRRDTGRTQWLHRKGAAPSDEGPVVIPGSRGALSYLVIPTGESHASAHSLAHGAGRKWTRTAARERMRERF
TAESLTRTAFKSHVVCENKDLLFEEAPPAYKPIDRVVTDLVEAGLVRVVATLAPVLTYKTRARPE

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Escherichia coli, GI2367224, Length=411, Percent_Identity=28.4671532846715, Blast_Score=120, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17506665, Length=444, Percent_Identity=28.1531531531532, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24585217, Length=444, Percent_Identity=27.027027027027, Blast_Score=100, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 41346; Mature: 41346

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTDASSEHLPTSAPQAPVRVIASAQSWVEGEAVRQLEAMARLPGMKLAVGLPDLHPGKG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
APVGAAFTSEGFLYPYLVGSDIGCGMGLWNVDLLARKAKPERWAGKLDLEGPWTGDTEGF
CCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHH
LQEHGVKSSGYEAALGTVGGGNHFAELQRVDAVHDAKVFSALGLEADRLLLLVHSGSRGL
HHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCH
GEAILRAHVDRHAAGGLADDSSEAQTYLTRHDHAVAWGRANRALVARRMLDGIGAMGQRV
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
LDVCHNSVTPRRDTGRTQWLHRKGAAPSDEGPVVIPGSRGALSYLVIPTGESHASAHSLA
HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEEECCCCHHHHHHHH
HGAGRKWTRTAARERMRERFTAESLTRTAFKSHVVCENKDLLFEEAPPAYKPIDRVVTDL
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCEECCCCCCCCHHHHHHHHH
VEAGLVRVVATLAPVLTYKTRARPE
HHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRTDASSEHLPTSAPQAPVRVIASAQSWVEGEAVRQLEAMARLPGMKLAVGLPDLHPGKG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
APVGAAFTSEGFLYPYLVGSDIGCGMGLWNVDLLARKAKPERWAGKLDLEGPWTGDTEGF
CCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHH
LQEHGVKSSGYEAALGTVGGGNHFAELQRVDAVHDAKVFSALGLEADRLLLLVHSGSRGL
HHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCH
GEAILRAHVDRHAAGGLADDSSEAQTYLTRHDHAVAWGRANRALVARRMLDGIGAMGQRV
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
LDVCHNSVTPRRDTGRTQWLHRKGAAPSDEGPVVIPGSRGALSYLVIPTGESHASAHSLA
HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEEECCCCHHHHHHHH
HGAGRKWTRTAARERMRERFTAESLTRTAFKSHVVCENKDLLFEEAPPAYKPIDRVVTDL
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCEECCCCCCCCHHHHHHHHH
VEAGLVRVVATLAPVLTYKTRARPE
HHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]