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The map label for this gene is yafC [C]

Identifier: 108757200

GI number: 108757200

Start: 6405690

End: 6406601

Strand: Reverse

Name: yafC [C]

Synonym: MXAN_5128

Alternate gene names: 108757200

Gene position: 6406601-6405690 (Counterclockwise)

Preceding gene: 108758830

Following gene: 108757987

Centisome position: 70.1

GC content: 71.38

Gene sequence:

>912_bases
ATGCCTCCGCGCAAGCTCGTTCGGCACCTCGTCTGGTTGGAGTCCTTCGCCGCCGCCGTGGAGGCGGGCAGCATCGAGGC
CGCCGCGGAGCACCTGGGCGTGGCGCGCTCGGTGGTGAGCGAGCACGTTCGCTCGCTGGAGCTGGCGCTGGCGGATGGTG
CGCCGTTGTTGGAGCGCGGGCCTGGCCGTCGCTTGCAGCTCACCGCCCGGGGGGAGCGGCTCTTCGCGGGCACCCAGACG
CCGCTGCATCAACTGGACATGAAGCGGCTGCGCGACCTGGCCAGCGCCGAGCCCGTGGTGCGGCTGGGCCTCAACCCGAC
GCTGTCCTTGTCCCTGGTGGGCGCCGTGGCGAGGGACGCCGCCGCCGCGGACCTCAAGCTGGTGCTCAGCTTCGGAGGGC
CCCACGAGCTGACGCGCCAGGTACAGACGCGGCAGCTCGACCTGGCGCTCGACTTCACGCCCCTGCCTACCCATGAAGGC
GTGGAGTCGGAGTCACTGCTGCGCATGCCCTTCGTCGTGCTCGCTGGGCCGGACAACGCGCTCGCGCGGCAGGCCGCGTC
CCGGAAGTCGCTGCACGTGAAGGACCTGGAGGGGCAGCGCTTCGTGGACTGGCTGCGTGATGACCCCTACGGCGGCGCCA
ACAGCGCCCGCTTCGCCGCCCACGGCGTGACGGTGGATGAAGTGGGGCGCGCGGAGAGCTTCCTTCTCCTCTACGAGTTG
CTGCGCGCGTTCCGCGCCTGCGCCATCACTCCGGACCTGCGCCCCATGCACCCGTTTCCACCGGACCTCCATGCGTGGCC
CCTCCTGGAAGAGGAGCCCCAGGCGGTCGAGGTGGTGGCCTTGTGGCCTTCGGGAGCGCTCAGCCCCGGCGCCCGGTTGG
TTCTGGATGGACTTCGCCGCAAGCCAGGCTAG

Upstream 100 bases:

>100_bases
GACATTGCACGGCGCAGGTATTCCGGATGCCAGACTTTCGCAAGCATCAATGAAGTCCGGGGGCGTATCCCGCTGATGGC
GGCGTGCAAGGATGCTGCTC

Downstream 100 bases:

>100_bases
TTCGACGTTAAAACGACGAAGACGTCGATTTCTGACGGATTTCCGTTCGCCTGGAGAAAGGATATCTTTCGAAAAGTAGA
AGATTCCGCCTGAGGTGAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: LysR Family Transcriptional Regulator

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MPPRKLVRHLVWLESFAAAVEAGSIEAAAEHLGVARSVVSEHVRSLELALADGAPLLERGPGRRLQLTARGERLFAGTQT
PLHQLDMKRLRDLASAEPVVRLGLNPTLSLSLVGAVARDAAAADLKLVLSFGGPHELTRQVQTRQLDLALDFTPLPTHEG
VESESLLRMPFVVLAGPDNALARQAASRKSLHVKDLEGQRFVDWLRDDPYGGANSARFAAHGVTVDEVGRAESFLLLYEL
LRAFRACAITPDLRPMHPFPPDLHAWPLLEEEPQAVEVVALWPSGALSPGARLVLDGLRRKPG

Sequences:

>Translated_303_residues
MPPRKLVRHLVWLESFAAAVEAGSIEAAAEHLGVARSVVSEHVRSLELALADGAPLLERGPGRRLQLTARGERLFAGTQT
PLHQLDMKRLRDLASAEPVVRLGLNPTLSLSLVGAVARDAAAADLKLVLSFGGPHELTRQVQTRQLDLALDFTPLPTHEG
VESESLLRMPFVVLAGPDNALARQAASRKSLHVKDLEGQRFVDWLRDDPYGGANSARFAAHGVTVDEVGRAESFLLLYEL
LRAFRACAITPDLRPMHPFPPDLHAWPLLEEEPQAVEVVALWPSGALSPGARLVLDGLRRKPG
>Mature_302_residues
PPRKLVRHLVWLESFAAAVEAGSIEAAAEHLGVARSVVSEHVRSLELALADGAPLLERGPGRRLQLTARGERLFAGTQTP
LHQLDMKRLRDLASAEPVVRLGLNPTLSLSLVGAVARDAAAADLKLVLSFGGPHELTRQVQTRQLDLALDFTPLPTHEGV
ESESLLRMPFVVLAGPDNALARQAASRKSLHVKDLEGQRFVDWLRDDPYGGANSARFAAHGVTVDEVGRAESFLLLYELL
RAFRACAITPDLRPMHPFPPDLHAWPLLEEEPQAVEVVALWPSGALSPGARLVLDGLRRKPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32937; Mature: 32806

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPRKLVRHLVWLESFAAAVEAGSIEAAAEHLGVARSVVSEHVRSLELALADGAPLLERG
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
PGRRLQLTARGERLFAGTQTPLHQLDMKRLRDLASAEPVVRLGLNPTLSLSLVGAVARDA
CCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
AAADLKLVLSFGGPHELTRQVQTRQLDLALDFTPLPTHEGVESESLLRMPFVVLAGPDNA
HHHCEEEEEECCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHCCEEEEECCCHH
LARQAASRKSLHVKDLEGQRFVDWLRDDPYGGANSARFAAHGVTVDEVGRAESFLLLYEL
HHHHHHHHCCCEEECCCCHHHHHHHHCCCCCCCCCCCCEECCCCHHHHCCHHHHHHHHHH
LRAFRACAITPDLRPMHPFPPDLHAWPLLEEEPQAVEVVALWPSGALSPGARLVLDGLRR
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHC
KPG
CCC
>Mature Secondary Structure 
PPRKLVRHLVWLESFAAAVEAGSIEAAAEHLGVARSVVSEHVRSLELALADGAPLLERG
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
PGRRLQLTARGERLFAGTQTPLHQLDMKRLRDLASAEPVVRLGLNPTLSLSLVGAVARDA
CCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
AAADLKLVLSFGGPHELTRQVQTRQLDLALDFTPLPTHEGVESESLLRMPFVVLAGPDNA
HHHCEEEEEECCCHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHCCEEEEECCCHH
LARQAASRKSLHVKDLEGQRFVDWLRDDPYGGANSARFAAHGVTVDEVGRAESFLLLYEL
HHHHHHHHCCCEEECCCCHHHHHHHHCCCCCCCCCCCCEECCCCHHHHCCHHHHHHHHHH
LRAFRACAITPDLRPMHPFPPDLHAWPLLEEEPQAVEVVALWPSGALSPGARLVLDGLRR
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHC
KPG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA