Definition Myxococcus xanthus DK 1622 chromosome, complete genome.
Accession NC_008095
Length 9,139,763

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The map label for this gene is phoD [H]

Identifier: 108757123

GI number: 108757123

Start: 1631694

End: 1633919

Strand: Direct

Name: phoD [H]

Synonym: MXAN_1389

Alternate gene names: 108757123

Gene position: 1631694-1633919 (Clockwise)

Preceding gene: 108759616

Following gene: 108762756

Centisome position: 17.85

GC content: 66.26

Gene sequence:

>2226_bases
ATGTTTCCTGCTGAGTGGAAGAGCGCTCTAGACTCGCGGCCCTGTCTCCTAACCCGCGCAACCCGGAGTCCCGCCTTGTT
CGATAGATTCAAACGCCGCAGTTTCCTCCAGGCCGTCGTCGCCGTTGCCGCGACCACTGCGTTCGGATGTTCCGACGACG
AGACGACGTCGGATGCTGGCGAGAAGTACTTCCCGCAGTCCGTGTGCTCGGGTGACCCGCGTCCGGACAGCGTGGTGTTG
TGGGTGCGGGCGGTGGACCCGGACAACGCGGGGGCGAACACGCAGGTGCGGCTGGAGGTGTCCACCAGCGAGTCGTTCAG
CAGCGTGGTGCTGGACCAGCAGTTCACCGCGCAGGCGCAGTTCGACCATGCGTTGAAGGTGAAGGTCACCAACCTGTCGG
CGCGCACGACGTACTACTACCGCTTCACCATCGACGCGAACGGTCAGAAGTACTCCACGGTGACGGGCCGCACCCGCACC
GCGCCGGCCGCGGGCGACGACGTGCCGGTGAAGTTCGTCTTCGCCAGCTGCCAGGACTACATCGGTCGTTACTACAACGC
GTGGCAGCACCTGCTGCAGCTCAACGAGGACCTCGACTTCGTCGTGTTCCTGGGCGACTACGTCTACGAGACGACGGGCG
ACGCGTCGTTCCAGTCCGTGGACGGACGCGGCATCGTCTTCAGCGAGCCCGAGAAGGCGCTCCGCCAGGGCACGGGCCTG
ACGGCGTTCTACGCGGCCAACTCGCTGTCCAACTACCGCGACCTCTACAAGACCCTGCGCACGGATAAGGTCATCCAGCA
GGTGCACGAGCGCTACCCGTTCGTCATCACGTGGGATGACCACGAGTTCTCCGACGACTGCTGGGGCGACGTCGCCACGT
ACACAGACGAGCGCACCAACGAGAAGCAGACCGAGCGCCGCCGCAACGCGGAGCAGGCCTTCTTCGAGTACATCCCCATG
GACCACGGCGCGAGCGACGCGGGCGCCATCGACATCAACGCCGTGGTGGCCCAGCCGACGCGCATCTACCGCGACTTCGA
GTTCGGCCGGAACCTGAAGCTGCTGGTGACGGACACGCGCACGTACCGCCCGGACCACCTCATCCCCGAGGACGCGTACC
CGGGCAAGGTGGCGGTGCCGGCCGAGCAGCTGGCCCTGGTGCTGTCGTCGCTGCCGGAGGCCACGCAGGCGCAGTTGCAG
TCCGACATGTTCGCCTACGTGGACATCGACGCGGCGGAGCTGGCGCCCTACAAGCAGATCCTCACGGGCGTGTACGTGCA
GCAGGCCGTCGCCGCCGGGCTCACGTCGGGAGAGGCGACCGAGAAGGCGGGCGCCTGGGTCTCCGGTGGGCTGTCGCTGT
TCTACGTCAACCAGGTGCTCAACGCCGTCAACCAGGCGCGTGAGGCGGCGGGCGATTCGGCCATTCCGCTCATCCCCGCG
ACGGGCGCGCCGCGCGGTCTGGCCTATGCGCACATGGGCAAGACGGGCCTCTTCGGCATCCAGGGCTCGCGCTACGTCGT
GGTGAAGCCCATCTTCGACCTGTACGCGGCCATCAAGTACATGGGCACCGCGGGAGCCTCGGAGGGCATCTTCGGCAACG
AGCAGCAGGCGTGGCTCCAGGAGTCCGTGCAGGCGGACAACGCGTGGAAGATCATCGTCTCCTCGATTTCGCTCACCTCC
ATGGTGTTCAAGCTGAGCGAGAAGGCGGACGTCCCGGACCCCACGCTGCGCCAGGACTTCTACTTCAACGTGGACCAGTG
GGACGGCTTCCCCACGAAGAAGCAGGAGTTCTTGAAGTTCCTGCGCGACAGCCAGGTGAAGAACGCGCTGTTCATCTCCG
GCGACATCCACGCGTCCTTCGCGTCCGTGGAGTCCGGCATCCCCGCGCTGACGACGCCGGCCATCTCCTCCGGCTCCATC
AAGGAGCTGGCGGGCCTGGCCGTCATCGGCGCGGGCTTCTCCACCGGCAGCACGGTGTACCGGTACATCGTGACGGAGCT
GGACAAGTCGCTGAAGGAAGCGCACCCCGGCATGGCGTTCGTGGACGGTGATGCCCACGGCTTCGTGGTGCTGGAGGTCG
GCGGCACGGAGGCGAAGGCGGCCTTCCACCTCATCCCGAGCACGGAAATCGCCAAGGACTACTCGCTGCGCCAGCCCTCC
GAGCTGACGGCGAAGTTCACCCGCCGCGACTTCATCATCAAGGACGGCACCATCACCTCCGCCTGA

Upstream 100 bases:

>100_bases
CCGCGAGGTGGGCGGCCCTTTTGCTTGGTGTCCGGCGTCCTTCGCGTGGGTTCGCACCGGGCGTGGGTGACACGATGCGT
TGTCGTTTCATTCCGTGGGG

Downstream 100 bases:

>100_bases
GGAGAGAATGCCTCACCTGTTCGGTGAGGAGCGAGGGCCGCGCCGGGAGCCACGTGCTCCGGGCCGCGGCCCTCGGCCGT
TTCAGGGTGGGGCGCGCCCG

Product: putative alkaline phosphatase

Products: NA

Alternate protein names: APaseD [H]

Number of amino acids: Translated: 741; Mature: 741

Protein sequence:

>741_residues
MFPAEWKSALDSRPCLLTRATRSPALFDRFKRRSFLQAVVAVAATTAFGCSDDETTSDAGEKYFPQSVCSGDPRPDSVVL
WVRAVDPDNAGANTQVRLEVSTSESFSSVVLDQQFTAQAQFDHALKVKVTNLSARTTYYYRFTIDANGQKYSTVTGRTRT
APAAGDDVPVKFVFASCQDYIGRYYNAWQHLLQLNEDLDFVVFLGDYVYETTGDASFQSVDGRGIVFSEPEKALRQGTGL
TAFYAANSLSNYRDLYKTLRTDKVIQQVHERYPFVITWDDHEFSDDCWGDVATYTDERTNEKQTERRRNAEQAFFEYIPM
DHGASDAGAIDINAVVAQPTRIYRDFEFGRNLKLLVTDTRTYRPDHLIPEDAYPGKVAVPAEQLALVLSSLPEATQAQLQ
SDMFAYVDIDAAELAPYKQILTGVYVQQAVAAGLTSGEATEKAGAWVSGGLSLFYVNQVLNAVNQAREAAGDSAIPLIPA
TGAPRGLAYAHMGKTGLFGIQGSRYVVVKPIFDLYAAIKYMGTAGASEGIFGNEQQAWLQESVQADNAWKIIVSSISLTS
MVFKLSEKADVPDPTLRQDFYFNVDQWDGFPTKKQEFLKFLRDSQVKNALFISGDIHASFASVESGIPALTTPAISSGSI
KELAGLAVIGAGFSTGSTVYRYIVTELDKSLKEAHPGMAFVDGDAHGFVVLEVGGTEAKAAFHLIPSTEIAKDYSLRQPS
ELTAKFTRRDFIIKDGTITSA

Sequences:

>Translated_741_residues
MFPAEWKSALDSRPCLLTRATRSPALFDRFKRRSFLQAVVAVAATTAFGCSDDETTSDAGEKYFPQSVCSGDPRPDSVVL
WVRAVDPDNAGANTQVRLEVSTSESFSSVVLDQQFTAQAQFDHALKVKVTNLSARTTYYYRFTIDANGQKYSTVTGRTRT
APAAGDDVPVKFVFASCQDYIGRYYNAWQHLLQLNEDLDFVVFLGDYVYETTGDASFQSVDGRGIVFSEPEKALRQGTGL
TAFYAANSLSNYRDLYKTLRTDKVIQQVHERYPFVITWDDHEFSDDCWGDVATYTDERTNEKQTERRRNAEQAFFEYIPM
DHGASDAGAIDINAVVAQPTRIYRDFEFGRNLKLLVTDTRTYRPDHLIPEDAYPGKVAVPAEQLALVLSSLPEATQAQLQ
SDMFAYVDIDAAELAPYKQILTGVYVQQAVAAGLTSGEATEKAGAWVSGGLSLFYVNQVLNAVNQAREAAGDSAIPLIPA
TGAPRGLAYAHMGKTGLFGIQGSRYVVVKPIFDLYAAIKYMGTAGASEGIFGNEQQAWLQESVQADNAWKIIVSSISLTS
MVFKLSEKADVPDPTLRQDFYFNVDQWDGFPTKKQEFLKFLRDSQVKNALFISGDIHASFASVESGIPALTTPAISSGSI
KELAGLAVIGAGFSTGSTVYRYIVTELDKSLKEAHPGMAFVDGDAHGFVVLEVGGTEAKAAFHLIPSTEIAKDYSLRQPS
ELTAKFTRRDFIIKDGTITSA
>Mature_741_residues
MFPAEWKSALDSRPCLLTRATRSPALFDRFKRRSFLQAVVAVAATTAFGCSDDETTSDAGEKYFPQSVCSGDPRPDSVVL
WVRAVDPDNAGANTQVRLEVSTSESFSSVVLDQQFTAQAQFDHALKVKVTNLSARTTYYYRFTIDANGQKYSTVTGRTRT
APAAGDDVPVKFVFASCQDYIGRYYNAWQHLLQLNEDLDFVVFLGDYVYETTGDASFQSVDGRGIVFSEPEKALRQGTGL
TAFYAANSLSNYRDLYKTLRTDKVIQQVHERYPFVITWDDHEFSDDCWGDVATYTDERTNEKQTERRRNAEQAFFEYIPM
DHGASDAGAIDINAVVAQPTRIYRDFEFGRNLKLLVTDTRTYRPDHLIPEDAYPGKVAVPAEQLALVLSSLPEATQAQLQ
SDMFAYVDIDAAELAPYKQILTGVYVQQAVAAGLTSGEATEKAGAWVSGGLSLFYVNQVLNAVNQAREAAGDSAIPLIPA
TGAPRGLAYAHMGKTGLFGIQGSRYVVVKPIFDLYAAIKYMGTAGASEGIFGNEQQAWLQESVQADNAWKIIVSSISLTS
MVFKLSEKADVPDPTLRQDFYFNVDQWDGFPTKKQEFLKFLRDSQVKNALFISGDIHASFASVESGIPALTTPAISSGSI
KELAGLAVIGAGFSTGSTVYRYIVTELDKSLKEAHPGMAFVDGDAHGFVVLEVGGTEAKAAFHLIPSTEIAKDYSLRQPS
ELTAKFTRRDFIIKDGTITSA

Specific function: Unknown

COG id: COG3540

COG function: function code P; Phosphodiesterase/alkaline phosphatase D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PhoD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018946
- InterPro:   IPR006311 [H]

Pfam domain/function: PF09423 PhoD [H]

EC number: =3.1.3.1 [H]

Molecular weight: Translated: 81403; Mature: 81403

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPAEWKSALDSRPCLLTRATRSPALFDRFKRRSFLQAVVAVAATTAFGCSDDETTSDAG
CCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
EKYFPQSVCSGDPRPDSVVLWVRAVDPDNAGANTQVRLEVSTSESFSSVVLDQQFTAQAQ
CCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHCHHHHHHHC
FDHALKVKVTNLSARTTYYYRFTIDANGQKYSTVTGRTRTAPAAGDDVPVKFVFASCQDY
CCCEEEEEEEEEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
IGRYYNAWQHLLQLNEDLDFVVFLGDYVYETTGDASFQSVDGRGIVFSEPEKALRQGTGL
HHHHHHHHHHHHHHCCCCCEEEEECCHHEECCCCCCEECCCCCEEEECCHHHHHHCCCCC
TAFYAANSLSNYRDLYKTLRTDKVIQQVHERYPFVITWDDHEFSDDCWGDVATYTDERTN
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHCCCCCCC
EKQTERRRNAEQAFFEYIPMDHGASDAGAIDINAVVAQPTRIYRDFEFGRNLKLLVTDTR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCEEEEEECCC
TYRPDHLIPEDAYPGKVAVPAEQLALVLSSLPEATQAQLQSDMFAYVDIDAAELAPYKQI
CCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCHHHHHHHHCCCEEEEECCHHHHCHHHHH
LTGVYVQQAVAAGLTSGEATEKAGAWVSGGLSLFYVNQVLNAVNQAREAAGDSAIPLIPA
HHHHHHHHHHHHCCCCCCCHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
TGAPRGLAYAHMGKTGLFGIQGSRYVVVKPIFDLYAAIKYMGTAGASEGIFGNEQQAWLQ
CCCCCCCEEEECCCCCEEEECCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ESVQADNAWKIIVSSISLTSMVFKLSEKADVPDPTLRQDFYFNVDQWDGFPTKKQEFLKF
HHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHH
LRDSQVKNALFISGDIHASFASVESGIPALTTPAISSGSIKELAGLAVIGAGFSTGSTVY
HHHCCCCCEEEEECCCHHHHHHHHCCCCCEECCCCCCCCHHHHHCEEEEECCCCCCHHHH
RYIVTELDKSLKEAHPGMAFVDGDAHGFVVLEVGGTEAKAAFHLIPSTEIAKDYSLRQPS
HHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCEEEEECCCHHHHHCCCCCCCH
ELTAKFTRRDFIIKDGTITSA
HHHHHHHHCEEEEECCCCCCC
>Mature Secondary Structure
MFPAEWKSALDSRPCLLTRATRSPALFDRFKRRSFLQAVVAVAATTAFGCSDDETTSDAG
CCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
EKYFPQSVCSGDPRPDSVVLWVRAVDPDNAGANTQVRLEVSTSESFSSVVLDQQFTAQAQ
CCCCCHHHHCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHCHHHHHHHC
FDHALKVKVTNLSARTTYYYRFTIDANGQKYSTVTGRTRTAPAAGDDVPVKFVFASCQDY
CCCEEEEEEEEEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
IGRYYNAWQHLLQLNEDLDFVVFLGDYVYETTGDASFQSVDGRGIVFSEPEKALRQGTGL
HHHHHHHHHHHHHHCCCCCEEEEECCHHEECCCCCCEECCCCCEEEECCHHHHHHCCCCC
TAFYAANSLSNYRDLYKTLRTDKVIQQVHERYPFVITWDDHEFSDDCWGDVATYTDERTN
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHCCCCCCC
EKQTERRRNAEQAFFEYIPMDHGASDAGAIDINAVVAQPTRIYRDFEFGRNLKLLVTDTR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCEEEEEECCC
TYRPDHLIPEDAYPGKVAVPAEQLALVLSSLPEATQAQLQSDMFAYVDIDAAELAPYKQI
CCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCHHHHHHHHCCCEEEEECCHHHHCHHHHH
LTGVYVQQAVAAGLTSGEATEKAGAWVSGGLSLFYVNQVLNAVNQAREAAGDSAIPLIPA
HHHHHHHHHHHHCCCCCCCHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
TGAPRGLAYAHMGKTGLFGIQGSRYVVVKPIFDLYAAIKYMGTAGASEGIFGNEQQAWLQ
CCCCCCCEEEECCCCCEEEECCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ESVQADNAWKIIVSSISLTSMVFKLSEKADVPDPTLRQDFYFNVDQWDGFPTKKQEFLKF
HHHCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHH
LRDSQVKNALFISGDIHASFASVESGIPALTTPAISSGSIKELAGLAVIGAGFSTGSTVY
HHHCCCCCEEEEECCCHHHHHHHHCCCCCEECCCCCCCCHHHHHCEEEEECCCCCCHHHH
RYIVTELDKSLKEAHPGMAFVDGDAHGFVVLEVGGTEAKAAFHLIPSTEIAKDYSLRQPS
HHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCEEEEECCCHHHHHCCCCCCCH
ELTAKFTRRDFIIKDGTITSA
HHHHHHHHCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760916; 9384377; 7704254; 25878 [H]