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The map label for this gene is pocR [H]

Identifier: 108757028

GI number: 108757028

Start: 4979121

End: 4979909

Strand: Direct

Name: pocR [H]

Synonym: MXAN_4060

Alternate gene names: 108757028

Gene position: 4979121-4979909 (Clockwise)

Preceding gene: 108760886

Following gene: 108763528

Centisome position: 54.48

GC content: 68.31

Gene sequence:

>789_bases
ATGAGCCCCCGGCCCGCCCTGCTCGAACAGATTGGTTCGGACGTCGTGCAGTTCCAGGATGCGTCCGCGGAGTTCGATGC
CACCGTCGGGAAGGTCCTGGCGCTCGGGCGCGCGGACCTCGCGTGCCTGACGCAGATTCACTTTGGAGGCCCCACGCCCC
TGGGCGCCGTTGCCCGCGAAGCCGACGTGGCGCGGCTGGAGCTTGCGGGCTACGTCCAGCGAGAAGCGGCCGGTGGTGGC
CAGCGGCTGGTGCTCACCTCGCATGCGCGCGAGTGGATCGACACCCTCTGGGGTCCCCTGCAGGCGGACGGCCACCAGCT
CATGGCAGGGCTGCCGGAGGAGCACCTGCGAATCGTCGCGGGGTTCCTGAAAGCGGCGAGAGCCATCCAGGACCGACACG
CGACCCGGGTGGCCAGGCTGCTCCAGGAGCCGGGGACTTCACGGGCGGCACGCCAGCGAGGCGGGCTCTCCCCCGCCGCA
CTTCGCCGCGTGCAGCTTTACGTGGAGGCGCACCTTGCGGAGCCAATCCGTGTAGGGGCGCTCGCCCAGCGCTCCGGATT
GAGCGTCTTTCATTTCACCCGCGCTTTCCGCCAGTCCACAGGCATGACACCGCACGTCTGGGTGCAGCAACGACGCGTGG
AACGAGCGCGCGACCTGTTGAGCAACTCATCACTGCCATTGGGGGACATCGCGCTCGCGGTTGGCTTCAGCTCACAAAGC
CACTTCACCACGGTGTTCCACAAACTCACCGGGCTGACTCCGGCAGTCATCCGACGCGACCAGCGGTGA

Upstream 100 bases:

>100_bases
ACGGAGTGCTTCAGGTTGATCATGGCGCCAGGATGCGTTTCCGGCACGCGAGCGTCTTTCGTGCCCTTGCGCCGTTTTTC
GCCTTCCTGCGGAGTTCCCG

Downstream 100 bases:

>100_bases
GGCGCCTGGAGTCAGGCTCCACCCATCTCTCCCCTGTTTGACAGTGTTACTCCGCCTCCGTAGGGTCGTGTCCGTCCCAA
GGGGGAGTCATGCAAAAGTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSPRPALLEQIGSDVVQFQDASAEFDATVGKVLALGRADLACLTQIHFGGPTPLGAVAREADVARLELAGYVQREAAGGG
QRLVLTSHAREWIDTLWGPLQADGHQLMAGLPEEHLRIVAGFLKAARAIQDRHATRVARLLQEPGTSRAARQRGGLSPAA
LRRVQLYVEAHLAEPIRVGALAQRSGLSVFHFTRAFRQSTGMTPHVWVQQRRVERARDLLSNSSLPLGDIALAVGFSSQS
HFTTVFHKLTGLTPAVIRRDQR

Sequences:

>Translated_262_residues
MSPRPALLEQIGSDVVQFQDASAEFDATVGKVLALGRADLACLTQIHFGGPTPLGAVAREADVARLELAGYVQREAAGGG
QRLVLTSHAREWIDTLWGPLQADGHQLMAGLPEEHLRIVAGFLKAARAIQDRHATRVARLLQEPGTSRAARQRGGLSPAA
LRRVQLYVEAHLAEPIRVGALAQRSGLSVFHFTRAFRQSTGMTPHVWVQQRRVERARDLLSNSSLPLGDIALAVGFSSQS
HFTTVFHKLTGLTPAVIRRDQR
>Mature_261_residues
SPRPALLEQIGSDVVQFQDASAEFDATVGKVLALGRADLACLTQIHFGGPTPLGAVAREADVARLELAGYVQREAAGGGQ
RLVLTSHAREWIDTLWGPLQADGHQLMAGLPEEHLRIVAGFLKAARAIQDRHATRVARLLQEPGTSRAARQRGGLSPAAL
RRVQLYVEAHLAEPIRVGALAQRSGLSVFHFTRAFRQSTGMTPHVWVQQRRVERARDLLSNSSLPLGDIALAVGFSSQSH
FTTVFHKLTGLTPAVIRRDQR

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=128, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790857, Length=99, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786251, Length=99, Percent_Identity=32.3232323232323, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28504; Mature: 28373

Theoretical pI: Translated: 11.34; Mature: 11.34

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRPALLEQIGSDVVQFQDASAEFDATVGKVLALGRADLACLTQIHFGGPTPLGAVARE
CCCCHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH
ADVARLELAGYVQREAAGGGQRLVLTSHAREWIDTLWGPLQADGHQLMAGLPEEHLRIVA
HHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHH
GFLKAARAIQDRHATRVARLLQEPGTSRAARQRGGLSPAALRRVQLYVEAHLAEPIRVGA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH
LAQRSGLSVFHFTRAFRQSTGMTPHVWVQQRRVERARDLLSNSSLPLGDIALAVGFSSQS
HHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEECCCCCH
HFTTVFHKLTGLTPAVIRRDQR
HHHHHHHHHHCCCHHHHCCCCC
>Mature Secondary Structure 
SPRPALLEQIGSDVVQFQDASAEFDATVGKVLALGRADLACLTQIHFGGPTPLGAVARE
CCCHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH
ADVARLELAGYVQREAAGGGQRLVLTSHAREWIDTLWGPLQADGHQLMAGLPEEHLRIVA
HHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHH
GFLKAARAIQDRHATRVARLLQEPGTSRAARQRGGLSPAALRRVQLYVEAHLAEPIRVGA
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHH
LAQRSGLSVFHFTRAFRQSTGMTPHVWVQQRRVERARDLLSNSSLPLGDIALAVGFSSQS
HHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEECCCCCH
HFTTVFHKLTGLTPAVIRRDQR
HHHHHHHHHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]