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The map label for this gene is yiaD [C]

Identifier: 108756980

GI number: 108756980

Start: 389769

End: 390998

Strand: Reverse

Name: yiaD [C]

Synonym: MXAN_0333

Alternate gene names: 108756980

Gene position: 390998-389769 (Counterclockwise)

Preceding gene: 108756947

Following gene: 108758462

Centisome position: 4.28

GC content: 71.38

Gene sequence:

>1230_bases
ATGCTGAAGCGTGGATGGAAGGCCCTCGCTGGCGTCACGGCGCTGGCCGCCGTGGGGTGTGCACACGCACCACCGCCCCA
GGAGCTCCTCAACGCGCGCGCGGCCTACCAGGAGGTCTCCACCAGCCCCCAGGGCCGAGAGCGTCCTCGAGACGTCGCGG
CGGCGCGAGATGCGCTGCTGGAAGCCGAGCGGGAGTACGACCGCAGCCAGGACTCTCCTCGCACCCGCTCGCTGTCCTAC
GTGGCGTTGCGCAAGTCCGAGACGGCGGGGGCACGCGGCACCGCGGACCTGGCGGCGCGGCGTCAGGCGGAGGCCCAGGC
CACGCTCCAGCAAGCGCAGGCGCGGCAGTGGCAGCGCTCGCAGGCGGAGCTGGATGCGGCCCGGCAGCAGCTCGCCCAGG
CCGAGCGTGAGCGGCTGCAAGCCCTCCAGCAACAGCAACAGTCCCGGCAGCACGCCGTGACGCAGCAACAGGAAGCCGAG
CGCATGCGGATGGATGCCCAGCGGCGCCAGCACGAGGCGGAACAGCTGCGGCGGCTGGCCCAGCAGCAGGAAGCGGAGTC
GCGGCGGCTGGCGGAGAAGACCACGCGGCTTCAGGAAGAAGCGCAACGCCGGGCGCGGGCCGAGTCCGAATCCCGGCGAC
TGGCCCAGGAGAACCACGAACTGCTCCAGCGCTCGGCGGAGCTGGAAGCGGAGCAGGAGGCACGGCGCCAGGTGGAGCGG
GAGCTGGAACGCGAGCGACAGGCGCGGCTCGACGCGGAACAGCGCGCCACGGAGGCGCTGACACAGTTGGAGTCGACGGC
GCGCGACGTGAAGGTCCGCGAGGAGGAACGAGGCCTGGTGCTGACGATGTCAGGGCAGGTGCTGTTCGCGTCGAACGCGG
TGGACCTGCTCCCTACGGCGCGTGAGCAACTGACGGAGGTGGCCCACGCGCTCAAGGTGTCCGACAGTCCCATGGTCATC
GAAGGCCACACGGATTCGATGGGCTCGGACGCGATGAACGAAGCCCTGTCCTACCGGCGGGCGGAGCACGTGCGGGAGTT
CCTCATCAGCCAGGGCGTGAGTCGCGACCGCATCCAGGTGCGCGGCCTGGGCGAGTACCGCCCCGTCGCCAACAACTCCA
CCCCAGAGGGCCGCGCCAACAACCGGCGCGTTGAAATCATCCTCCCGCGTGGAGGGGAGGAGGCCACTGGCGGCAGCGGC
GCTGAGCCCCCGACGACGCCTCGGCGCTGA

Upstream 100 bases:

>100_bases
GCCGTCCCGCTGGAGCGCGAGTCGCGACGCTTGGCCGCCCAGGCGGAGTCCCTGCGCCGCGGCCAGCCGTGAGCAGCCAA
CCTCGACAGGAGAGAGCGAC

Downstream 100 bases:

>100_bases
AATCCAACGGACGCCGGAGTTGAATGCCCGCCATGGGCCCAGACGCAGTTTTCAACCTGCTGAGCACCGAACGCCTGCAT
CTGGTGCAGCTCCCACCGGA

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MLKRGWKALAGVTALAAVGCAHAPPPQELLNARAAYQEVSTSPQGRERPRDVAAARDALLEAEREYDRSQDSPRTRSLSY
VALRKSETAGARGTADLAARRQAEAQATLQQAQARQWQRSQAELDAARQQLAQAERERLQALQQQQQSRQHAVTQQQEAE
RMRMDAQRRQHEAEQLRRLAQQQEAESRRLAEKTTRLQEEAQRRARAESESRRLAQENHELLQRSAELEAEQEARRQVER
ELERERQARLDAEQRATEALTQLESTARDVKVREEERGLVLTMSGQVLFASNAVDLLPTAREQLTEVAHALKVSDSPMVI
EGHTDSMGSDAMNEALSYRRAEHVREFLISQGVSRDRIQVRGLGEYRPVANNSTPEGRANNRRVEIILPRGGEEATGGSG
AEPPTTPRR

Sequences:

>Translated_409_residues
MLKRGWKALAGVTALAAVGCAHAPPPQELLNARAAYQEVSTSPQGRERPRDVAAARDALLEAEREYDRSQDSPRTRSLSY
VALRKSETAGARGTADLAARRQAEAQATLQQAQARQWQRSQAELDAARQQLAQAERERLQALQQQQQSRQHAVTQQQEAE
RMRMDAQRRQHEAEQLRRLAQQQEAESRRLAEKTTRLQEEAQRRARAESESRRLAQENHELLQRSAELEAEQEARRQVER
ELERERQARLDAEQRATEALTQLESTARDVKVREEERGLVLTMSGQVLFASNAVDLLPTAREQLTEVAHALKVSDSPMVI
EGHTDSMGSDAMNEALSYRRAEHVREFLISQGVSRDRIQVRGLGEYRPVANNSTPEGRANNRRVEIILPRGGEEATGGSG
AEPPTTPRR
>Mature_409_residues
MLKRGWKALAGVTALAAVGCAHAPPPQELLNARAAYQEVSTSPQGRERPRDVAAARDALLEAEREYDRSQDSPRTRSLSY
VALRKSETAGARGTADLAARRQAEAQATLQQAQARQWQRSQAELDAARQQLAQAERERLQALQQQQQSRQHAVTQQQEAE
RMRMDAQRRQHEAEQLRRLAQQQEAESRRLAEKTTRLQEEAQRRARAESESRRLAQENHELLQRSAELEAEQEARRQVER
ELERERQARLDAEQRATEALTQLESTARDVKVREEERGLVLTMSGQVLFASNAVDLLPTAREQLTEVAHALKVSDSPMVI
EGHTDSMGSDAMNEALSYRRAEHVREFLISQGVSRDRIQVRGLGEYRPVANNSTPEGRANNRRVEIILPRGGEEATGGSG
AEPPTTPRR

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=120, Percent_Identity=42.5, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787191, Length=118, Percent_Identity=38.9830508474576, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788957, Length=112, Percent_Identity=36.6071428571429, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 46054; Mature: 46054

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRGWKALAGVTALAAVGCAHAPPPQELLNARAAYQEVSTSPQGRERPRDVAAARDALL
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
EAEREYDRSQDSPRTRSLSYVALRKSETAGARGTADLAARRQAEAQATLQQAQARQWQRS
HHHHHHHCCCCCCCHHCHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAELDAARQQLAQAERERLQALQQQQQSRQHAVTQQQEAERMRMDAQRRQHEAEQLRRLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQQEAESRRLAEKTTRLQEEAQRRARAESESRRLAQENHELLQRSAELEAEQEARRQVER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ELERERQARLDAEQRATEALTQLESTARDVKVREEERGLVLTMSGQVLFASNAVDLLPTA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCHHHHHHH
REQLTEVAHALKVSDSPMVIEGHTDSMGSDAMNEALSYRRAEHVREFLISQGVSRDRIQV
HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
RGLGEYRPVANNSTPEGRANNRRVEIILPRGGEEATGGSGAEPPTTPRR
CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKRGWKALAGVTALAAVGCAHAPPPQELLNARAAYQEVSTSPQGRERPRDVAAARDALL
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
EAEREYDRSQDSPRTRSLSYVALRKSETAGARGTADLAARRQAEAQATLQQAQARQWQRS
HHHHHHHCCCCCCCHHCHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAELDAARQQLAQAERERLQALQQQQQSRQHAVTQQQEAERMRMDAQRRQHEAEQLRRLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQQEAESRRLAEKTTRLQEEAQRRARAESESRRLAQENHELLQRSAELEAEQEARRQVER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ELERERQARLDAEQRATEALTQLESTARDVKVREEERGLVLTMSGQVLFASNAVDLLPTA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCHHHHHHH
REQLTEVAHALKVSDSPMVIEGHTDSMGSDAMNEALSYRRAEHVREFLISQGVSRDRIQV
HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
RGLGEYRPVANNSTPEGRANNRRVEIILPRGGEEATGGSGAEPPTTPRR
CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]