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The map label for this gene is yfiC [C]

Identifier: 108563833

GI number: 108563833

Start: 1464437

End: 1465153

Strand: Direct

Name: yfiC [C]

Synonym: HPAG1_1408

Alternate gene names: 108563833

Gene position: 1464437-1465153 (Clockwise)

Preceding gene: 108563832

Following gene: 108563834

Centisome position: 91.74

GC content: 39.89

Gene sequence:

>717_bases
ATGGATAGAAAACTCTTAAGATTATACCAGCCCTTAAACGCTTATTCTTACAATAGCGATTCGCTTTTTTTATACGATTT
TTCACGCTCTTTGATTAAAAATAGTGGCACGATTTTAGACATAGGATCAGGGTGTGGGATCTTAGGCTTACTCTGCGCTA
GAGACAACCCGCTAGCGAGCGTTCATTTGGTGGAAAAGGACAGCAAAATGGCGTTTTGCTCCCAAAAAAATGCCCTTAAA
TTCCCTAACGCTCAAGTGTTTGAGGGCGATTTTTTAGATTTTAACCCCCCGATTTTGTATGATGCGATTGTGTGCAACCC
TCCTTTTTACGCTTTAGGATCTATTAAATCTCAAATTAAAGGGCATGCGAGGCACCAGAGCGAATTAGACTTCGCTTCTT
TGGTGGCTAAAGTGAAAAAATGCCTGAAACCTAAAGGGTATTTTATTTTTTGCTATGAAGCCTTGTCGCTTTGCTTGGTC
ATAGAGGGTTTAAGAAGCGTTAAACTCACGCTAGAGGCTTTAAGGTTTGTCCAAAGTTTTAAAGACAAAAACGCCCATTT
GATGCTTGGAGCGGCTAGGAACAATTCCAAAAGCGCTCTAAAAGTTCTGCCCCCTTTAATCACGCACAATTCCAAAAACC
AAAGCGACAACACCAAAGAAGTTTTAAGCATCTATCAAATTTGTAACACTTATTCTATCAAAGCGCTTCTCAATTAG

Upstream 100 bases:

>100_bases
ATGCGTCTATGATTAGCGAAGCGTTTAATACGCTCGCTTTAAAAACCCCTTTTAAGGGGCGGTTGTTGCATGTGCAAATA
TTAGAAAATGAAGCCCTTTT

Downstream 100 bases:

>100_bases
CGCCCTTAAATTAAGGATTCAAAAATGAAATGTTCGCATTGCCAGTTGGAGTTTAAAGAAAGTGAGCTTTTTAAAGAAGT
GATCCATCATAAAGAATTGT

Product: hypothetical protein

Products: NA

Alternate protein names: tRNA m6A37 methyltransferase [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRSLIKNSGTILDIGSGCGILGLLCARDNPLASVHLVEKDSKMAFCSQKNALK
FPNAQVFEGDFLDFNPPILYDAIVCNPPFYALGSIKSQIKGHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLV
IEGLRSVKLTLEALRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITHNSKNQSDNTKEVLSIYQICNTYSIKALLN

Sequences:

>Translated_238_residues
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRSLIKNSGTILDIGSGCGILGLLCARDNPLASVHLVEKDSKMAFCSQKNALK
FPNAQVFEGDFLDFNPPILYDAIVCNPPFYALGSIKSQIKGHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLV
IEGLRSVKLTLEALRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITHNSKNQSDNTKEVLSIYQICNTYSIKALLN
>Mature_238_residues
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRSLIKNSGTILDIGSGCGILGLLCARDNPLASVHLVEKDSKMAFCSQKNALK
FPNAQVFEGDFLDFNPPILYDAIVCNPPFYALGSIKSQIKGHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLV
IEGLRSVKLTLEALRFVQSFKDKNAHLMLGAARNNSKSALKVLPPLITHNSKNQSDNTKEVLSIYQICNTYSIKALLN

Specific function: Specifically methylates the adenine in position 37 of tRNA(Val) [H]

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. tRNA (adenine-N(6)-)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR007848
- InterPro:   IPR022882 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: =2.1.1.55 [H]

Molecular weight: Translated: 26566; Mature: 26566

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRSLIKNSGTILDIGSGCGILGLLCARDNPLAS
CCHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHCCCCEEEECCCCCHHHHEECCCCCCEE
VHLVEKDSKMAFCSQKNALKFPNAQVFEGDFLDFNPPILYDAIVCNPPFYALGSIKSQIK
EEEEECCCCEEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
GHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLRSVKLTLEALRFVQSF
HHHHCHHCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDKNAHLMLGAARNNSKSALKVLPPLITHNSKNQSDNTKEVLSIYQICNTYSIKALLN
CCCCCEEEEEECCCCCCCHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHCCHHEEEECC
>Mature Secondary Structure
MDRKLLRLYQPLNAYSYNSDSLFLYDFSRSLIKNSGTILDIGSGCGILGLLCARDNPLAS
CCHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHCCCCEEEECCCCCHHHHEECCCCCCEE
VHLVEKDSKMAFCSQKNALKFPNAQVFEGDFLDFNPPILYDAIVCNPPFYALGSIKSQIK
EEEEECCCCEEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
GHARHQSELDFASLVAKVKKCLKPKGYFIFCYEALSLCLVIEGLRSVKLTLEALRFVQSF
HHHHCHHCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDKNAHLMLGAARNNSKSALKVLPPLITHNSKNQSDNTKEVLSIYQICNTYSIKALLN
CCCCCEEEEEECCCCCCCHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHCCHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]