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The map label for this gene is exbD [C]

Identifier: 108563797

GI number: 108563797

Start: 1423290

End: 1423691

Strand: Direct

Name: exbD [C]

Synonym: HPAG1_1372

Alternate gene names: 108563797

Gene position: 1423290-1423691 (Clockwise)

Preceding gene: 108563796

Following gene: 108563798

Centisome position: 89.16

GC content: 35.32

Gene sequence:

>402_bases
GTGAAAAAAGTAGAATCCATGAATGTGGTGCCTTTCATTGACATCATGCTTGTGTTGTTAGTGATCGTGCTTACAACAGC
GTCTTTTGTGCAAACTTCAAAGCTCCCTATTAGCATTCCCCAAGTGGATAAAGACAGCACTGATTCTAAAGACGTGTTGG
ACAAAAAACAAGTTACAATCTCCATTTCTAATAAAGGCTCTTTTTATTTTGACGATAAAGAAATCAGCTTTGAAAATTTA
AAGCACAAGGTTTCCACTTTGGCTAAAGACACCCCTATTGTCTTACAAGGCGATAAGAAAAGCAATTTGGATAACTTTAT
CAAAGTCGTGGATTTGTTGCAAACGAACAATCTGAAGCAGCTTTACATTCTTGTTGAAGATAAAAAGAATCAAAAAAATT
AG

Upstream 100 bases:

>100_bases
GTGAGAAAAAGCGAAATTTTAGTCACTAAATGGGATATTTTCCACCACCCGGTTGACACGCAATCCCATGAGATTTATAA
CAAAGCCTAAGGATTAAGCG

Downstream 100 bases:

>100_bases
TTTTAGTTAATTTTTAGCATTCTTTAGCTAAAATCTGTGCTTATGTTTAATTTTTATCAAGGGAGTTTTAAATGAAACGC
ACTTACCAACCACACAACAC

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MKKVESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPQVDKDSTDSKDVLDKKQVTISISNKGSFYFDDKEISFENL
KHKVSTLAKDTPIVLQGDKKSNLDNFIKVVDLLQTNNLKQLYILVEDKKNQKN

Sequences:

>Translated_133_residues
MKKVESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPQVDKDSTDSKDVLDKKQVTISISNKGSFYFDDKEISFENL
KHKVSTLAKDTPIVLQGDKKSNLDNFIKVVDLLQTNNLKQLYILVEDKKNQKN
>Mature_133_residues
MKKVESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPQVDKDSTDSKDVLDKKQVTISISNKGSFYFDDKEISFENL
KHKVSTLAKDTPIVLQGDKKSNLDNFIKVVDLLQTNNLKQLYILVEDKKNQKN

Specific function: Involved In The Tonb-Dependent Energy-Dependent Transport Of Various Receptor-Bound Substrates. [C]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15058; Mature: 15058

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPQVDKDSTDSKDVLDKKQVTI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHCCCEEEEE
SISNKGSFYFDDKEISFENLKHKVSTLAKDTPIVLQGDKKSNLDNFIKVVDLLQTNNLKQ
EECCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEE
LYILVEDKKNQKN
EEEEEECCCCCCC
>Mature Secondary Structure
MKKVESMNVVPFIDIMLVLLVIVLTTASFVQTSKLPISIPQVDKDSTDSKDVLDKKQVTI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHCCCEEEEE
SISNKGSFYFDDKEISFENLKHKVSTLAKDTPIVLQGDKKSNLDNFIKVVDLLQTNNLKQ
EECCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEE
LYILVEDKKNQKN
EEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]