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The map label for this gene is csrA [H]

Identifier: 108563793

GI number: 108563793

Start: 1421337

End: 1421567

Strand: Direct

Name: csrA [H]

Synonym: HPAG1_1368

Alternate gene names: 108563793

Gene position: 1421337-1421567 (Clockwise)

Preceding gene: 108563792

Following gene: 108563794

Centisome position: 89.04

GC content: 41.56

Gene sequence:

>231_bases
ATGCTCATACTCAGCCGCAAAGTTAATGAAGGGATTGTCATTGATGATAACATCCATATTAAAGTCATTTCTATAGATAG
AGGGAGTGTGCGTTTAGGGTTTGAAGCCCCTGAAAGCACCCTTATTTTGCGCGCTGAACTCAAAGAGGCCATTGTGAGCG
AAAACCAAAAAGCTTCTGCGTGCGTAGATGAAAGCGTGTTAGAAAACATCAAAAAGGTCATTAAGCCTTGA

Upstream 100 bases:

>100_bases
TAGTGCAGAAGGCCTTAGCGTTTTGGATAAAATCAAACAAGGCGATATTATAGAGAGCGTTGTGTTTAGCCCTTCTCTAT
AAAGGAACAAAAGATTAGAC

Downstream 100 bases:

>100_bases
TGCATGTCTTTGAAGTTTATCCTAAAGTCAATATTTTTTTAAAAATCCTTCACAAAGAAGGGGCTTACCACAAGCTTATT
TCTCGCATGTGTTTAGTCAA

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASACVDESVLENIKKVIKP

Sequences:

>Translated_76_residues
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASACVDESVLENIKKVIKP
>Mature_76_residues
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASACVDESVLENIKKVIKP

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 8398; Mature: 8398

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASA
CEEECCCCCCCEEECCCCEEEEEEECCCCEEEECCCCCCEEEEHHHHHHHHHCCCCCCHH
CVDESVLENIKKVIKP
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASA
CEEECCCCCCCEEECCCCEEEEEEECCCCEEEECCCCCCEEEEHHHHHHHHHCCCCCCHH
CVDESVLENIKKVIKP
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA