Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108563787

Identifier: 108563787

GI number: 108563787

Start: 1414553

End: 1414813

Strand: Direct

Name: 108563787

Synonym: HPAG1_1362

Alternate gene names: NA

Gene position: 1414553-1414813 (Clockwise)

Preceding gene: 108563783

Following gene: 108563788

Centisome position: 88.61

GC content: 38.31

Gene sequence:

>261_bases
ATGGCGTGTAAATTTTGCCCCAAGATCAGAAAAACAGATTGGATTTTTATTTTAATCGCTGCTTTAGGCTTTTATGCAGT
CAATAAACTAGGGTATGCACCCAAATTCAATACCCCCACTTCAAAGCTTTCACGCCCTCTTTCACGCCCTATTGAAAAGC
CTGACAATATGACTGAAGAAGAAAGGAAAAAGCGTTTTATAGAGTTGCAAAAAGCATGCTTACTCCATAAAGACAAAAAG
GCATGCGAAGAGGTTTTTTAG

Upstream 100 bases:

>100_bases
TTAAAGATTTTTTGAATGAAACTCCACATGCAGGTTTTCCTAGACTTAAAAATTTGATTATAAGAGTGTATTATACTTCA
AATGTTTTAAGGATTAAATC

Downstream 100 bases:

>100_bases
ATTGTTTTTGTTGTATTTTGCGCTTTTAAGGTGTAAATTTTATACGCTCTTTTTGTTTGTAAAAAGGCTTTTTTTAGCGG
TGGTTTTTAGCACCAAGATA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MACKFCPKIRKTDWIFILIAALGFYAVNKLGYAPKFNTPTSKLSRPLSRPIEKPDNMTEEERKKRFIELQKACLLHKDKK
ACEEVF

Sequences:

>Translated_86_residues
MACKFCPKIRKTDWIFILIAALGFYAVNKLGYAPKFNTPTSKLSRPLSRPIEKPDNMTEEERKKRFIELQKACLLHKDKK
ACEEVF
>Mature_85_residues
ACKFCPKIRKTDWIFILIAALGFYAVNKLGYAPKFNTPTSKLSRPLSRPIEKPDNMTEEERKKRFIELQKACLLHKDKKA
CEEVF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10035; Mature: 9904

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MACKFCPKIRKTDWIFILIAALGFYAVNKLGYAPKFNTPTSKLSRPLSRPIEKPDNMTEE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHH
ERKKRFIELQKACLLHKDKKACEEVF
HHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ACKFCPKIRKTDWIFILIAALGFYAVNKLGYAPKFNTPTSKLSRPLSRPIEKPDNMTEE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHH
ERKKRFIELQKACLLHKDKKACEEVF
HHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA