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The map label for this gene is 108563780

Identifier: 108563780

GI number: 108563780

Start: 1406128

End: 1408203

Strand: Reverse

Name: 108563780

Synonym: HPAG1_1355

Alternate gene names: NA

Gene position: 1408203-1406128 (Counterclockwise)

Preceding gene: 108563781

Following gene: 108563779

Centisome position: 88.21

GC content: 43.64

Gene sequence:

>2076_bases
ATGACGGATAACAATCATTACGAAAATCATGAAAACCATGAAAACAGCAGTGAAAATTCAAAAGCTGATGAGATGCGAGC
CGGAGCGTTTGAGCGCTTCACCAACCGCAAAAAGCGTTTCAGAGAAAACGCGCAAAAAAACGCAGAGTCTTCAAACCATG
AAGCGTCTTCGCACCATAAAAAAGAGCATCGCCCCAACAAAAAACCAAACAACCACCACAAACAAAAACATGCCAAAACA
CGAAATTACGCCAAAGAAGAATTGGATAGCAACAAAGTAGAGGGCGTTACGGAAATTTTGCATGTGAATGAGAGAGGGAC
TTTAGGCTTTCATAAGGAGTTAAAAAAGGGCGTTGAAGCGAATAACAAGATCCAAGTGGAGCATTTAAACCCGCATTATA
AGATGAATTTAAACTCTAAAGCGAGCGTTAAAATCACGCCTTTAGGGGGCTTGGGCGAGATTGGGGGGAACATGATGGTC
ATTGAAACCCCAAAAAGCGCGATCGTGATTGATGCGGGCATGAGCTTCCCTAAAGAAGGGCTTTTTGGCGTGGATATTTT
AATCCCGGATTTTTCCTATTTGCACCAAATCAAGGACAAAATCGCCGGTATTATCATCACCCATGCCCATGAAGATCACA
TAGGGGCCACGCCTTATTTGTTTAAAGAGTTGCAATTCCCCCTTTATGGCACGCCTTTGAGTTTGGGGCTGATTGGGAGC
AAGTTTGACGAACATGGTTTGAAAAAATACCGCTCGTATTTTAAGATCATAGAAAAGCGTTGCCCCATTAGCGTGGGCGA
ATTTATCATTGAATGGATCCACATCACGCATTCTATCATTGACAGCAGCGCTTTAGCGATCCAAACTAAAGCCGGAACCA
TCATTCACACCGGCGATTTTAAAATCGATCACACCCCGGTGGATAATTTGCCCACGGATTTGTATCGTTTGGCGCACTAT
GGCGAAAAGGGGGTGATGCTTCTTTTAAGCGATTCCACTAACTCCCATAAATCCGGAACCACGCCGAGTGAAAGCACCAT
AGCGCCGGCTTTTGACACGCTTTTTAAAGAAGCGCAAGGGAGGGTGATTATGAGCACGTTCTCTAGCAATATCCACCGGG
TCTATCAAGCCATACAATACGGCATCAAATACAACCGCAAGATTGCTGTGATCGGGCGCTCTATGGAAAAAAACCTAGAC
ATCGCCAGAGAATTGGGCTATATCCATTTGCCTTATCAATCTTTTATTGAAGCCAATGAAGTCGCCAAATACCCGGACAA
TGAAGTCTTAATCGTAACGACCGGCTCACAAGGCGAAACCATGAGCGCGCTTTATCGCATGGCGACTGATGAGCACCGCC
ACATTTCTATCAAACCCAACGATTTAGTCATCATCTCCGCTAAAGCCATTCCTGGCAATGAAGCGAGCGTTTCAGCGGTG
TTGAATTTCTTGATCAAAAAAGAAGCCAAAGTGGCTTATCAAGAATTTGACAATATCCATGTGAGCGGGCATGCCGCCCA
AGAAGAGCAAAAGCTCATGTTAAGACTCATTAAGCCCAAGTTTTTCTTACCCGTGCATGGGGAATATAACCATGTCGCGC
GCCACAAGCAAACCGCTATTTCTTGCGGGGTGCCTGAAAAAAATATCTATTTAATGGAAGATGGCGATCAGGTGGAAGTC
GGCCCTGCGTTTATTAAAAAAGTCGGCACGATTAAAAGCGGTAAAAGCTATGTGGATAACCAAAGCAATTTGAGTATTGA
TACAAGCATCGTGCAACAAAGAGAAGAAGTCGCTAGCGTGGGGGTGTTTGTGGCTACGATTTTTGTGAATAAAAACAAGC
AAGCGCTTTTAGAAAGCTCTCAATTTTCCAGTTTAGGGCTTGTGGGTTTTAAAGATGAAAAGCCTTTGATGAAAGAAATT
CAAGGGGGCTTAGAGGTGTTATTGAGATCTAGCAACGCCGAAATTTTGAATAACCCTAAAAAATTAGAAGATCACACTCG
TAATTTCATCAGAAAGGCGCTCTTTAAAAAGTTTAGAAAATACCCGGCTATCGTTTGTCATGCCCATGCTTTTTGA

Upstream 100 bases:

>100_bases
AGCGTGAGGGCGTCTGAGATAAAAGATTATCTCAAGCTCTTAAATTACCTTTTAAAAGGCTAATGCCTTTTTAAAAAATT
ACTATAAAGGAATAAAAGTT

Downstream 100 bases:

>100_bases
TTGTAACGCTACCGCTATACAAGTCTTAAAAGATGAAGCGAGCGCGCTTTTAGAAAGCGTTAAACAATTCCAAGAACCTA
ATGATTTAGAAGCGATTGTC

Product: ATP/GTP binding protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 691; Mature: 690

Protein sequence:

>691_residues
MTDNNHYENHENHENSSENSKADEMRAGAFERFTNRKKRFRENAQKNAESSNHEASSHHKKEHRPNKKPNNHHKQKHAKT
RNYAKEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMV
IETPKSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGS
KFDEHGLKKYRSYFKIIEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDLYRLAHY
GEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLD
IARELGYIHLPYQSFIEANEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAV
LNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMEDGDQVEV
GPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASVGVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKPLMKEI
QGGLEVLLRSSNAEILNNPKKLEDHTRNFIRKALFKKFRKYPAIVCHAHAF

Sequences:

>Translated_691_residues
MTDNNHYENHENHENSSENSKADEMRAGAFERFTNRKKRFRENAQKNAESSNHEASSHHKKEHRPNKKPNNHHKQKHAKT
RNYAKEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMV
IETPKSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGS
KFDEHGLKKYRSYFKIIEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDLYRLAHY
GEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLD
IARELGYIHLPYQSFIEANEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAV
LNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMEDGDQVEV
GPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASVGVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKPLMKEI
QGGLEVLLRSSNAEILNNPKKLEDHTRNFIRKALFKKFRKYPAIVCHAHAF
>Mature_690_residues
TDNNHYENHENHENSSENSKADEMRAGAFERFTNRKKRFRENAQKNAESSNHEASSHHKKEHRPNKKPNNHHKQKHAKTR
NYAKEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVI
ETPKSAIVIDAGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGSK
FDEHGLKKYRSYFKIIEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDFKIDHTPVDNLPTDLYRLAHYG
EKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDI
ARELGYIHLPYQSFIEANEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAVL
NFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAISCGVPEKNIYLMEDGDQVEVG
PAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASVGVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKPLMKEIQ
GGLEVLLRSSNAEILNNPKKLEDHTRNFIRKALFKKFRKYPAIVCHAHAF

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 77680; Mature: 77548

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDNNHYENHENHENSSENSKADEMRAGAFERFTNRKKRFRENAQKNAESSNHEASSHHK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
KEHRPNKKPNNHHKQKHAKTRNYAKEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEA
HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCHHHHHHHCCCC
NNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPKEG
CCEEEEEECCCCEEECCCCCCEEEEEECCCHHHCCCCEEEEECCCCEEEEECCCCCCCCC
LFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGS
CCEEEEECCCHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEECCCCC
KFDEHGLKKYRSYFKIIEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDF
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCE
KIDHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQG
EECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
RVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEANE
CEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHCCEEECCHHHHHCHHH
VAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAV
HHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHH
LNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAI
HHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHEE
SCGVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASV
ECCCCCCCEEEEECCCEEEECHHHHHHHCCCCCCCHHCCCCCCCEEHHHHHHHHHHHHHH
GVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKPLMKEIQGGLEVLLRSSNAEILNNPK
HEEEEEEEECCCHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHCCCH
KLEDHTRNFIRKALFKKFRKYPAIVCHAHAF
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
>Mature Secondary Structure 
TDNNHYENHENHENSSENSKADEMRAGAFERFTNRKKRFRENAQKNAESSNHEASSHHK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
KEHRPNKKPNNHHKQKHAKTRNYAKEELDSNKVEGVTEILHVNERGTLGFHKELKKGVEA
HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCHHHHHHHCCCC
NNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPKEG
CCEEEEEECCCCEEECCCCCCEEEEEECCCHHHCCCCEEEEECCCCEEEEECCCCCCCCC
LFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYGTPLSLGLIGS
CCEEEEECCCHHHHHHHHHHHCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEECCCCC
KFDEHGLKKYRSYFKIIEKRCPISVGEFIIEWIHITHSIIDSSALAIQTKAGTIIHTGDF
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCE
KIDHTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLFKEAQG
EECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
RVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEANE
CEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCHHHHHCCEEECCHHHHHCHHH
VAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIPGNEASVSAV
HHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCHHHHHH
LNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNHVARHKQTAI
HHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHEE
SCGVPEKNIYLMEDGDQVEVGPAFIKKVGTIKSGKSYVDNQSNLSIDTSIVQQREEVASV
ECCCCCCCEEEEECCCEEEECHHHHHHHCCCCCCCHHCCCCCCCEEHHHHHHHHHHHHHH
GVFVATIFVNKNKQALLESSQFSSLGLVGFKDEKPLMKEIQGGLEVLLRSSNAEILNNPK
HEEEEEEEECCCHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHCCCH
KLEDHTRNFIRKALFKKFRKYPAIVCHAHAF
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]