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The map label for this gene is rbn [C]

Identifier: 108563756

GI number: 108563756

Start: 1381234

End: 1382112

Strand: Direct

Name: rbn [C]

Synonym: HPAG1_1331

Alternate gene names: 108563756

Gene position: 1381234-1382112 (Clockwise)

Preceding gene: 108563755

Following gene: 108563759

Centisome position: 86.52

GC content: 37.32

Gene sequence:

>879_bases
ATGAGAGAATTTTTTAAAAGCGTTAGAGGGTTTTTGCGCCTTCTTAGAATGATTTTCCCCGAGCGTCTGAAAAACGCCTT
TTTGGGCTTGAGCGAATTGTTTTACTACGCTTCTAGCTTGAGTTTTTATACGATTTTGTCTTTATCGCCTATTTTGTTGT
TTGTGTTTAGCCTTTTTGTGTCTCATTACATGCAAGCGCACAGCGGTGAAATGGAAGCCTTGATTTTCCCTAACGCTCCC
AAACTCATTGGCGCGATTAAGGATTTTTTAGAAAATTTTAAAAAAACAGACATGACTTTAGGCACGCTTGAAGAGGTGTC
CATTGTGGTGGCGTTGGTGCTTTTTTGTGAAAACTACCGCTCCATCGCGTCAAAAATTTTTGATGCAAAGCCCAGAGATT
ATGCACATTTTAAGGGTAAAGAAATCTTTTTATTTTGGGGTTTTGGCACGACTTTAGTGTTTTTATTCGCTCTGCCTTTG
GTGGTGTTTTTTGACATTAAGATCCAAGTGTTTTTTGAAGATAAAGATTCAAGCTTGTTGCATGTTTTAAGATGGATAGG
CACTTATGCGTTTTTTTTGATCCTTTTTACCATTCCCACGAATAAGGTGTTTAAACATTATTTTTGGGTGTTTTTATGGG
TGTTTTTTACGAGCGTTTCTTGGCATGTGTTAAAATGGGCTTTCACTTATTATGTGCTGTATAATCGCACTTACCATGAG
CTTTATGGGAGCGTTTCTATTTTGTGGTTTTTGATGAGCTGGGTGTATGTGAGCTGGCTTGTGATTTTAATTGGCATGTA
TGGGTGCAAGGTGTGTGATACATACGATCCTAAAGAAGTGTTTAGGAAATTTTTAGGCTTTTTTAAAAAAGAAACTTGA

Upstream 100 bases:

>100_bases
TGGTGTTGGGGGATTATTTAACCACCAAAGGCAAAGCCCCTAAAAAAGATATAGAAAAACTGCTCTCTTATGGCTTGACA
ATGGCGACAAGCTGTCATTA

Downstream 100 bases:

>100_bases
TGAAAAAGTTTTCTTTTAGATCGGTTCTAAAAATCTAAAACACAAAAACCATTCAAACACAACCCCATACCAACCCCAAC
TAAAAAAGTTAAAAATAAAA

Product: putative ribonuclease N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MREFFKSVRGFLRLLRMIFPERLKNAFLGLSELFYYASSLSFYTILSLSPILLFVFSLFVSHYMQAHSGEMEALIFPNAP
KLIGAIKDFLENFKKTDMTLGTLEEVSIVVALVLFCENYRSIASKIFDAKPRDYAHFKGKEIFLFWGFGTTLVFLFALPL
VVFFDIKIQVFFEDKDSSLLHVLRWIGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHE
LYGSVSILWFLMSWVYVSWLVILIGMYGCKVCDTYDPKEVFRKFLGFFKKET

Sequences:

>Translated_292_residues
MREFFKSVRGFLRLLRMIFPERLKNAFLGLSELFYYASSLSFYTILSLSPILLFVFSLFVSHYMQAHSGEMEALIFPNAP
KLIGAIKDFLENFKKTDMTLGTLEEVSIVVALVLFCENYRSIASKIFDAKPRDYAHFKGKEIFLFWGFGTTLVFLFALPL
VVFFDIKIQVFFEDKDSSLLHVLRWIGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHE
LYGSVSILWFLMSWVYVSWLVILIGMYGCKVCDTYDPKEVFRKFLGFFKKET
>Mature_292_residues
MREFFKSVRGFLRLLRMIFPERLKNAFLGLSELFYYASSLSFYTILSLSPILLFVFSLFVSHYMQAHSGEMEALIFPNAP
KLIGAIKDFLENFKKTDMTLGTLEEVSIVVALVLFCENYRSIASKIFDAKPRDYAHFKGKEIFLFWGFGTTLVFLFALPL
VVFFDIKIQVFFEDKDSSLLHVLRWIGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHE
LYGSVSILWFLMSWVYVSWLVILIGMYGCKVCDTYDPKEVFRKFLGFFKKET

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 34658; Mature: 34658

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREFFKSVRGFLRLLRMIFPERLKNAFLGLSELFYYASSLSFYTILSLSPILLFVFSLFV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHYMQAHSGEMEALIFPNAPKLIGAIKDFLENFKKTDMTLGTLEEVSIVVALVLFCENYR
HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
SIASKIFDAKPRDYAHFKGKEIFLFWGFGTTLVFLFALPLVVFFDIKIQVFFEDKDSSLL
HHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHH
HVLRWIGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYGSVSILWFLMSWVYVSWLVILIGMYGCKVCDTYDPKEVFRKFLGFFKKET
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MREFFKSVRGFLRLLRMIFPERLKNAFLGLSELFYYASSLSFYTILSLSPILLFVFSLFV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHYMQAHSGEMEALIFPNAPKLIGAIKDFLENFKKTDMTLGTLEEVSIVVALVLFCENYR
HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
SIASKIFDAKPRDYAHFKGKEIFLFWGFGTTLVFLFALPLVVFFDIKIQVFFEDKDSSLL
HHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHH
HVLRWIGTYAFFLILFTIPTNKVFKHYFWVFLWVFFTSVSWHVLKWAFTYYVLYNRTYHE
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYGSVSILWFLMSWVYVSWLVILIGMYGCKVCDTYDPKEVFRKFLGFFKKET
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA