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The map label for this gene is yhdJ [C]

Identifier: 108563753

GI number: 108563753

Start: 1375931

End: 1377640

Strand: Reverse

Name: yhdJ [C]

Synonym: HPAG1_1328

Alternate gene names: 108563753

Gene position: 1377640-1375931 (Counterclockwise)

Preceding gene: 108563754

Following gene: 108563752

Centisome position: 86.3

GC content: 33.33

Gene sequence:

>1710_bases
ATGCTAAAAAACCCGCTAAAAACCCTACTAGATATTTTAATCAATCGTTTCACTAAAGAACGCTTAGAAACTTTAATCCT
ACAAAATGATGAGAAGCTTTTAACCTTCATGCTTGAAAATAAAAACGCCAACGACTACAAAAACGCTTTTTTCAAAACGA
TCGCTAATTCGCTTGTATTCAATCAAAAAGCGTTATTGGAATGTTTAACAAAAGAATTAGAAAACTCTTTCACACGATTT
GAAAATAAAATAGGCTTGTATTCACAAGGGCGTCCCATAAAATCCAGCGAGCTAGTCGTTTTGAATTTCCCTTTTAAAGA
CAATGTTTTACTAGGCAACGCTAAAGATAACAACACCAAATCTAAAGAGTGTTTTTACCATGAAATACTGCATAAAAAAG
AAATTGACACGCTTTTAAAGAAAAAAGCGTTGTGCCGTTTTGAAATGCATGGAGAAGGCGATTTACAAAGTGCTTTAAAA
GACAAGAACACGAATTATCTCATCAAAGGCAATAATTTGATCGCTCTTCATTCTTTAAAAAAGAAATTCGCTAAACAAGT
GAAATGCATCTACATTGACCCCCCTTATAATACCGGTAATGACAGCTTTAATTACAACGATAATTTCAACCACAGCTCTT
GGCTAGTGTTTATGAAAAACAGGCTTGAAGTGGCTAGGGAATTTTTAAGCGATGATGGGAGTATTTATATTAATTTAGAT
TATAATGAAGTGCATTATTGTAAGGTGTTAATGGACGAAATTTTTGGAGTTGAAAATTTTCAAAGAGAGATAATTTGGCG
TATCGGTTGGTTATCCGGTTATAAAACATCAATCAATAATTTTATAAGAAATCACGATACAATTTTATTCTATTCTAAGA
ATGCAGATAAATTATTTTTCAATAAAAAATATATAGAAAACAAAGATTTTAAAGAATTAATAAAAATAGAAAAAATACAA
AGCAATTTAGACAACTTAGGAATAGACAGAGAAAAACAAAAGAATATTATAAAAATTATAAATCACGAAACAAGACCCAA
AAGATACCCTCTAGAAGATATTTGGAATGGAAACGAATACGATGATCTAAATAGTATCGCCATTGTTAGTTACTCTGGTG
AGACTGTATCCAAAATGTTAGGAACAGAAGAAATAAAGGGGCAAAAATCAGAAAAACTTATCCAAAGAATCTTAGAGGCT
TCCACCAACGAAAACGATCTCGTTTTAGATTTTTTTGCTGGGAGCGGGACGACTTGCGCGGTGGCGCACAAAATGAAACG
CCGCTACATTGGCATCGAGCAAATGGACTATATAGAAACGATCACCAAAGAAAGGTTAAAAAAAGTCATAGAGGGCGAGC
AAGGGGGCATTTCTAAAAAATGCGATTTTAAAGGGGGCGGGAGTTTTGTCTATGCTGAATTGAAAGAAGTGAATTTAGAA
ATTAAAAAACAAATCCTTAACGCTAACAGCGCGAGCGAATGCCTAAAAATCTTTAACGATCTTAGCGAGCGTTTTTTAAA
ACGCGCCGATTGCAAGATGGATGAAATTCATAGCGAAGAGTTCCAAAATTTAGATCTCAATGAGCAAAAAAGGATTTATT
GCAAGCTTTTTGACTCTAACGAAGACTATTTGAACTTGGGCGATATTGACGAAGACGCATGGGGGATAGATGAGATCACT
AAAAAATACAATGAAATTTTTTATTCTTAA

Upstream 100 bases:

>100_bases
AAAAACTCCATTTAAAAGGCTTGCCGTTTTTCACGCTCCACAATAAAGTAGCAAATAGCGATTTTCAAACCGCTTTCGAT
CAAATTTTTAAGGATTAAGA

Downstream 100 bases:

>100_bases
ATTCAATCATTCAATGCGCGCCATTTAACGCATCAAAACCTATTTAGCGAGTAAAAACAAACGATTAAAAATATTGTTGT
AGTATTCAAGCCAACCAACA

Product: putative type III restriction enzyme M protein

Products: NA

Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]

Number of amino acids: Translated: 569; Mature: 569

Protein sequence:

>569_residues
MLKNPLKTLLDILINRFTKERLETLILQNDEKLLTFMLENKNANDYKNAFFKTIANSLVFNQKALLECLTKELENSFTRF
ENKIGLYSQGRPIKSSELVVLNFPFKDNVLLGNAKDNNTKSKECFYHEILHKKEIDTLLKKKALCRFEMHGEGDLQSALK
DKNTNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEVAREFLSDDGSIYINLD
YNEVHYCKVLMDEIFGVENFQREIIWRIGWLSGYKTSINNFIRNHDTILFYSKNADKLFFNKKYIENKDFKELIKIEKIQ
SNLDNLGIDREKQKNIIKIINHETRPKRYPLEDIWNGNEYDDLNSIAIVSYSGETVSKMLGTEEIKGQKSEKLIQRILEA
STNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCDFKGGGSFVYAELKEVNLE
IKKQILNANSASECLKIFNDLSERFLKRADCKMDEIHSEEFQNLDLNEQKRIYCKLFDSNEDYLNLGDIDEDAWGIDEIT
KKYNEIFYS

Sequences:

>Translated_569_residues
MLKNPLKTLLDILINRFTKERLETLILQNDEKLLTFMLENKNANDYKNAFFKTIANSLVFNQKALLECLTKELENSFTRF
ENKIGLYSQGRPIKSSELVVLNFPFKDNVLLGNAKDNNTKSKECFYHEILHKKEIDTLLKKKALCRFEMHGEGDLQSALK
DKNTNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEVAREFLSDDGSIYINLD
YNEVHYCKVLMDEIFGVENFQREIIWRIGWLSGYKTSINNFIRNHDTILFYSKNADKLFFNKKYIENKDFKELIKIEKIQ
SNLDNLGIDREKQKNIIKIINHETRPKRYPLEDIWNGNEYDDLNSIAIVSYSGETVSKMLGTEEIKGQKSEKLIQRILEA
STNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCDFKGGGSFVYAELKEVNLE
IKKQILNANSASECLKIFNDLSERFLKRADCKMDEIHSEEFQNLDLNEQKRIYCKLFDSNEDYLNLGDIDEDAWGIDEIT
KKYNEIFYS
>Mature_569_residues
MLKNPLKTLLDILINRFTKERLETLILQNDEKLLTFMLENKNANDYKNAFFKTIANSLVFNQKALLECLTKELENSFTRF
ENKIGLYSQGRPIKSSELVVLNFPFKDNVLLGNAKDNNTKSKECFYHEILHKKEIDTLLKKKALCRFEMHGEGDLQSALK
DKNTNYLIKGNNLIALHSLKKKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEVAREFLSDDGSIYINLD
YNEVHYCKVLMDEIFGVENFQREIIWRIGWLSGYKTSINNFIRNHDTILFYSKNADKLFFNKKYIENKDFKELIKIEKIQ
SNLDNLGIDREKQKNIIKIINHETRPKRYPLEDIWNGNEYDDLNSIAIVSYSGETVSKMLGTEEIKGQKSEKLIQRILEA
STNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCDFKGGGSFVYAELKEVNLE
IKKQILNANSASECLKIFNDLSERFLKRADCKMDEIHSEEFQNLDLNEQKRIYCKLFDSNEDYLNLGDIDEDAWGIDEIT
KKYNEIFYS

Specific function: Unknown

COG id: COG2189

COG function: function code L; Adenine specific DNA methylase Mod

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: =2.1.1.72 [H]

Molecular weight: Translated: 66461; Mature: 66461

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNPLKTLLDILINRFTKERLETLILQNDEKLLTFMLENKNANDYKNAFFKTIANSLVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
NQKALLECLTKELENSFTRFENKIGLYSQGRPIKSSELVVLNFPFKDNVLLGNAKDNNTK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCC
SKECFYHEILHKKEIDTLLKKKALCRFEMHGEGDLQSALKDKNTNYLIKGNNLIALHSLK
HHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCEEEECCCEEEHHHHH
KKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEVAREFLSDDGSIYINLD
HHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEEEEC
YNEVHYCKVLMDEIFGVENFQREIIWRIGWLSGYKTSINNFIRNHDTILFYSKNADKLFF
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCEEEE
NKKYIENKDFKELIKIEKIQSNLDNLGIDREKQKNIIKIINHETRPKRYPLEDIWNGNEY
CHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCC
DDLNSIAIVSYSGETVSKMLGTEEIKGQKSEKLIQRILEASTNENDLVLDFFAGSGTTCA
CCCCCEEEEEECCHHHHHHHCHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH
VAHKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCDFKGGGSFVYAELKEVNLE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHH
IKKQILNANSASECLKIFNDLSERFLKRADCKMDEIHSEEFQNLDLNEQKRIYCKLFDSN
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEEECCC
EDYLNLGDIDEDAWGIDEITKKYNEIFYS
CCEEECCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLKNPLKTLLDILINRFTKERLETLILQNDEKLLTFMLENKNANDYKNAFFKTIANSLVF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
NQKALLECLTKELENSFTRFENKIGLYSQGRPIKSSELVVLNFPFKDNVLLGNAKDNNTK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCC
SKECFYHEILHKKEIDTLLKKKALCRFEMHGEGDLQSALKDKNTNYLIKGNNLIALHSLK
HHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCEEEECCCEEEHHHHH
KKFAKQVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMKNRLEVAREFLSDDGSIYINLD
HHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEEEEC
YNEVHYCKVLMDEIFGVENFQREIIWRIGWLSGYKTSINNFIRNHDTILFYSKNADKLFF
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCEEEE
NKKYIENKDFKELIKIEKIQSNLDNLGIDREKQKNIIKIINHETRPKRYPLEDIWNGNEY
CHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCC
DDLNSIAIVSYSGETVSKMLGTEEIKGQKSEKLIQRILEASTNENDLVLDFFAGSGTTCA
CCCCCEEEEEECCHHHHHHHCHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHH
VAHKMKRRYIGIEQMDYIETITKERLKKVIEGEQGGISKKCDFKGGGSFVYAELKEVNLE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHH
IKKQILNANSASECLKIFNDLSERFLKRADCKMDEIHSEEFQNLDLNEQKRIYCKLFDSN
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEEECCC
EDYLNLGDIDEDAWGIDEITKKYNEIFYS
CCEEECCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]