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The map label for this gene is exbD [H]

Identifier: 108563712

GI number: 108563712

Start: 1331698

End: 1332087

Strand: Direct

Name: exbD [H]

Synonym: HPAG1_1287

Alternate gene names: 108563712

Gene position: 1331698-1332087 (Clockwise)

Preceding gene: 108563711

Following gene: 108563713

Centisome position: 83.42

GC content: 37.69

Gene sequence:

>390_bases
ATGAAAAGCATCAGAAGAGGCGATGGGCTGAATGTTGTCCCTTTCATTGATATTATGCTCGTTTTGCTAGCGATTGTGTT
AAGCGTTTCTACTTTTATCGCGCAAGGTAAGATTAAAGTCAGTCTCCCTAACGCTAAAAATGCGGAAAAATCCCAGCCAA
ACGATCAAAAAGTGGTGGTCATCTCCGTAGATGAGCATGACAATATTTTCGTAGATGACAAACCGACGAATTTAGAAGCT
TTGAGCGCTGTAGTCAAACAAACAGATCCTAAAACCCTTATAGACTTAAAAAGTGACAAAAGCTCTCGTTTTGAAACTTT
TATCAGCATTATGGATATTTTAAAAGAGCATAATCATGAAAATTTCTCCATCTCCACAGAAGCTAAGTAA

Upstream 100 bases:

>100_bases
CCGCTCTAGGGCTTGCTGTGGCGATTCCCACTTTGATCGCTTATAATAGCTTGTTGAGAAAATCCGATGTTTTGAGTGAA
AAATTTAGGATCATGAAGAA

Downstream 100 bases:

>100_bases
AGTCTCAACGAGTGTTAGCTTTTTAATTTCTTTTGCCCTATACGCTATAGGGTTTGGCTATTTTTTACTGCGCGAAGACG
CCCCAGAGCCTTTAGCGCAA

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKSIRRGDGLNVVPFIDIMLVLLAIVLSVSTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPTNLEA
LSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTEAK

Sequences:

>Translated_129_residues
MKSIRRGDGLNVVPFIDIMLVLLAIVLSVSTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPTNLEA
LSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTEAK
>Mature_129_residues
MKSIRRGDGLNVVPFIDIMLVLLAIVLSVSTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPTNLEA
LSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTEAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=121, Percent_Identity=33.0578512396694, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014171 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14334; Mature: 14334

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIRRGDGLNVVPFIDIMLVLLAIVLSVSTFIAQGKIKVSLPNAKNAEKSQPNDQKVVV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEE
ISVDEHDNIFVDDKPTNLEALSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHE
EEECCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC
NFSISTEAK
CEEEECCCC
>Mature Secondary Structure
MKSIRRGDGLNVVPFIDIMLVLLAIVLSVSTFIAQGKIKVSLPNAKNAEKSQPNDQKVVV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEE
ISVDEHDNIFVDDKPTNLEALSAVVKQTDPKTLIDLKSDKSSRFETFISIMDILKEHNHE
EEECCCCCEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC
NFSISTEAK
CEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]