Click here to switch to the map view.

The map label for this gene is exbB [H]

Identifier: 108563711

GI number: 108563711

Start: 1331201

End: 1331701

Strand: Direct

Name: exbB [H]

Synonym: HPAG1_1286

Alternate gene names: 108563711

Gene position: 1331201-1331701 (Clockwise)

Preceding gene: 108563708

Following gene: 108563712

Centisome position: 83.39

GC content: 39.12

Gene sequence:

>501_bases
ATGGCTGTGTTGCATGTTGCTTTAATCTTAAGGGAATTGTTTTATCATAGACAAGGAGTTTTTATGGGCGGTTTTTCAGT
GGGAATGTTGAAAGATTGTGTGGACATATTTGTTTTTGCGGTGCTTGGCGTGGCCAGTTTTTTAGCTTTGTGGTTTGTGA
TTGAAAGGGTTATTTTTTATTCTAAAGTCGATTTGAAAGCTTACGATGATATAGATGCCCTGAATTTGGATTTAACCAAG
AATCTAACCATTCTTTATGTGATTTTTTCTAACGCGCCTTATGTGGGCTTATTAGGGACGGTTTTAGGGATTATGGTCAT
TTTCTATGACATGGGCGTGAGCGGTGGGATGGACGCTAAAACGATCATGGTAGGTTTGTCTTTGGCTTTAAAAGCGACCG
CTCTAGGGCTTGCTGTGGCGATTCCCACTTTGATCGCTTATAATAGCTTGTTGAGAAAATCCGATGTTTTGAGTGAAAAA
TTTAGGATCATGAAGAAATGA

Upstream 100 bases:

>100_bases
TTGTTATTATTAAAACAATATAATCAACAATCTAACATTCTTTTATCATTTTTAAGCATTTATGCGAACGAATGCTTCTT
AAAGAGCACATGCTCTTAGA

Downstream 100 bases:

>100_bases
AAAGCATCAGAAGAGGCGATGGGCTGAATGTTGTCCCTTTCATTGATATTATGCTCGTTTTGCTAGCGATTGTGTTAAGC
GTTTCTACTTTTATCGCGCA

Product: biopolymer transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MAVLHVALILRELFYHRQGVFMGGFSVGMLKDCVDIFVFAVLGVASFLALWFVIERVIFYSKVDLKAYDDIDALNLDLTK
NLTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAIPTLIAYNSLLRKSDVLSEK
FRIMKK

Sequences:

>Translated_166_residues
MAVLHVALILRELFYHRQGVFMGGFSVGMLKDCVDIFVFAVLGVASFLALWFVIERVIFYSKVDLKAYDDIDALNLDLTK
NLTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAIPTLIAYNSLLRKSDVLSEK
FRIMKK
>Mature_165_residues
AVLHVALILRELFYHRQGVFMGGFSVGMLKDCVDIFVFAVLGVASFLALWFVIERVIFYSKVDLKAYDDIDALNLDLTKN
LTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAIPTLIAYNSLLRKSDVLSEKF
RIMKK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates. Protects exbD from proteolytic degradation and functionally stabilizes tonB [H]

COG id: COG0811

COG function: function code U; Biopolymer transport proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbB/tolQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002898
- InterPro:   IPR014172 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 18267; Mature: 18136

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVLHVALILRELFYHRQGVFMGGFSVGMLKDCVDIFVFAVLGVASFLALWFVIERVIFY
CHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKVDLKAYDDIDALNLDLTKNLTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGMDAK
HHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHH
TIMVGLSLALKATALGLAVAIPTLIAYNSLLRKSDVLSEKFRIMKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVLHVALILRELFYHRQGVFMGGFSVGMLKDCVDIFVFAVLGVASFLALWFVIERVIFY
HHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKVDLKAYDDIDALNLDLTKNLTILYVIFSNAPYVGLLGTVLGIMVIFYDMGVSGGMDAK
HHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHH
TIMVGLSLALKATALGLAVAIPTLIAYNSLLRKSDVLSEKFRIMKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]