| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is dorA [H]
Identifier: 108563410
GI number: 108563410
Start: 1036156
End: 1038546
Strand: Reverse
Name: dorA [H]
Synonym: HPAG1_0985
Alternate gene names: 108563410
Gene position: 1038546-1036156 (Counterclockwise)
Preceding gene: 108563411
Following gene: 108563409
Centisome position: 65.06
GC content: 41.49
Gene sequence:
>2391_bases ATGTCCATTTCACGCAGAAGTATCCTAACAAAAGTCCCAATCGCACTCGCTAGCACTAATGTTTTGAAAGCTACTGGTGT TTTTGAAAAAGTAGAATCCATTCCGCATGCAACGCATTTTGGCCCCTTTATCGCAAAGGTTCAAAACGGAGTGATTAAAG ATATTATCCCCCAAAAGAGCGATTATAACCCTACCATGATGTTAAAAGCGATGGTTGATAGGGTGTATTCAGATAGTAGG GTGAAGTATCCTTGCGTGCGTAAGAGTTTCTTAGAAAACAAAAAAAACCACAAAGAATTGCGCGGGAGAGAAGAGTTTGT GCGTGTGAGTTGGGATGTGGCGTTGGATTTGGCGGCTAAAAAACTTAAAGAAATCCCTAAAGAAAACATTTATAATGCCA GTTATGGTGGTTGGGGGCATGCGGGCAGCTTGCATCGTTGCCATCATTTAACATGGCGTTTTTTTAATACGACTTTAGGG GGGGCTATTGGCACTGATGGGGAATATAGTAATGGCGCGGCTGCAAGAATAAACCCTATGATTGTAGGGGATATGGAAGT TTATTCGCAACAAACCACGCATGAAGAGATGATTAAAAATTGTAAGGTGTATGTCATGTGGGGGGCGGATTTACTCAAGT GCAACCGCATTGATTATTTTGTGCCAAACCATGTCAATGACAGCTACTACCCCAAGTATAAAAGAGCCGGTATTAAATTC ATTAGTATCGATCCCATTTATACCGAAACCGCTCAAGCCTTTAACGCTGAATGGATACCCATTCGCCCTAATACTGATGT AGCGTTGATGCTAGGCATGATGCATTATCTTTATACGAGCAATCAATATGATAAAGCGTTTATCGCTAAATACACTGATG GTTTTGATAAATTTTTACCCTATTTGCTAGGAGAGAGCGATAATGCACCTAAGACTTTAGAATGGGCGTCTCAAATCACT GGAGTGAGTGCAGAAAAAATCAAAGAATTAGCGGATTTATTTGTCTCTAAACGCACTTTTTTAGCGGGTAATTGGGCCAT GCAAAGAGCTCAGTATGGCGAGCAACCGGATTGGGCGTTAATTGTTTTAGCTAGCATGATTGGTCAAGTGGGCTTATCTG GTGGGGGCTTTGGCTTTTCTATGCATTATGGAGGGAACGCTCAAGCAAGCTCAGGGGCAAGAATTGTTCCGATGATTTCA CAAGGGCATAATTCTGTAAAAAGCGTTATTCCAGCATCTAGAATTTCTGAAGCGATTTTAAACCCGGATAAAGAAATTGA TTTTATGGGCAAAAAACTCAAATTGCCTAAAATCAAAATGATTTATAATTGTGGGGCGGATTTGTTAGGGCATGAAGCTG ATACAAACGAGCTGATTCGCGCTTTAAGGACCTTAGATTGCGTGATCGTGCATGAGCCTTGGTGGACGCCTACGGCAAAA TTTGCTGATATTGTCTTTGCTTCCACTAGCACTATGGAAAGAGATGATATTACTTTTGGAGGGAGTTATTCTAAGAATGT GGTTTATGCCATGCGTAAGGTGGTAGAGCCTGTTTATGAATCTAAAGACGATTATGAGATTTTCAGACAGCTTGCTTTAC GCATTGGGGGCAATGAAACAGAACAGAAATTCACTGAATCTAAGAGTTACATGGAATGGATTAAGAGCCTTTATGAAAAA AGCGATGGCCCTACTTTGAAATCGTTTGATCAATTTTGGAGGGATGGCTTTGTGGAGTTTGAAATCCCTGAAAATGCGAG AAAGTTTGTGCGTCATGCGAAATTCAGGCAAGACCCTATTAATAATAAGCTGGATACAGAGAGCGGGAAAATTCAAATTT TTTCTCAAAAATGTGCGGATTTTAAACTAGCTGATTTTAAAGGGTATCCTACTTGGTTTGAGCCAGCTGAGTGGCTAGGC TCTAAAATGGCTGAGACTTATCCGTTCCATTTGATCTCTCCGCACCCAAAATACCGTGTCAATTCACAGCTTGATAACAC TTGGGTTAGGAATGTGTATAAAATTCAAGGCAGAGAGCCTGTAATGATCAACGAACTAGACGCTAATAAATTAGGCATTA GGCATGGTGAAATTGTAGAAGTGTTTAACGCTAGGGGGAGGTTGTTAGCAGGGGCGTTTGTAACTAAGAATATCCGTCAA GGGGTTTTGAGTATCCAAAAAGGGGCGTGGTATGACCCAGAAGATGCGAGGGTTAGAAACCCACGATGCAATGCGGGGCA TGTGAATACGCTCACTTCTTTGCGCCCCACAAGCAGCATGACACAAGCCATTTCAGCCAATACCGCCTTAGTTAATATCA GAAGACTCAGAAGGTATGAATTAGTCAAGCCCTATCATTCCATTTCAACACCAAGCATTATTGGGGCTTAA
Upstream 100 bases:
>100_bases TAAATTAACGTCCATGCTGAGGGCTTATTAGCGGTAATTTTAGGTGAATCTATGTTAGAATTTGGGGTGTTTTAACAGAA TGCAAGCTTGAAGGAGAACC
Downstream 100 bases:
>100_bases AAGGAGTGAAAATACTAGCATGAGGGTGTTTTAGAAAGACTTAAGTGCTAAAGACTTGAGCGCTAGCCAAGCTAAAGCGT AATTCTCAATTTTTATATTA
Product: biotin sulfoxide reductase
Products: NA
Alternate protein names: DMSO reductase; DMSOR [H]
Number of amino acids: Translated: 796; Mature: 795
Protein sequence:
>796_residues MSISRRSILTKVPIALASTNVLKATGVFEKVESIPHATHFGPFIAKVQNGVIKDIIPQKSDYNPTMMLKAMVDRVYSDSR VKYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAKKLKEIPKENIYNASYGGWGHAGSLHRCHHLTWRFFNTTLG GAIGTDGEYSNGAAARINPMIVGDMEVYSQQTTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKF ISIDPIYTETAQAFNAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESDNAPKTLEWASQIT GVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWALIVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMIS QGHNSVKSVIPASRISEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHEADTNELIRALRTLDCVIVHEPWWTPTAK FADIVFASTSTMERDDITFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQLALRIGGNETEQKFTESKSYMEWIKSLYEK SDGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKLADFKGYPTWFEPAEWLG SKMAETYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGREPVMINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQ GVLSIQKGAWYDPEDARVRNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRRLRRYELVKPYHSISTPSIIGA
Sequences:
>Translated_796_residues MSISRRSILTKVPIALASTNVLKATGVFEKVESIPHATHFGPFIAKVQNGVIKDIIPQKSDYNPTMMLKAMVDRVYSDSR VKYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAKKLKEIPKENIYNASYGGWGHAGSLHRCHHLTWRFFNTTLG GAIGTDGEYSNGAAARINPMIVGDMEVYSQQTTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKF ISIDPIYTETAQAFNAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESDNAPKTLEWASQIT GVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWALIVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMIS QGHNSVKSVIPASRISEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHEADTNELIRALRTLDCVIVHEPWWTPTAK FADIVFASTSTMERDDITFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQLALRIGGNETEQKFTESKSYMEWIKSLYEK SDGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKLADFKGYPTWFEPAEWLG SKMAETYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGREPVMINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQ GVLSIQKGAWYDPEDARVRNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRRLRRYELVKPYHSISTPSIIGA >Mature_795_residues SISRRSILTKVPIALASTNVLKATGVFEKVESIPHATHFGPFIAKVQNGVIKDIIPQKSDYNPTMMLKAMVDRVYSDSRV KYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAKKLKEIPKENIYNASYGGWGHAGSLHRCHHLTWRFFNTTLGG AIGTDGEYSNGAAARINPMIVGDMEVYSQQTTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKFI SIDPIYTETAQAFNAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLPYLLGESDNAPKTLEWASQITG VSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWALIVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQ GHNSVKSVIPASRISEAILNPDKEIDFMGKKLKLPKIKMIYNCGADLLGHEADTNELIRALRTLDCVIVHEPWWTPTAKF ADIVFASTSTMERDDITFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQLALRIGGNETEQKFTESKSYMEWIKSLYEKS DGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPINNKLDTESGKIQIFSQKCADFKLADFKGYPTWFEPAEWLGS KMAETYPFHLISPHPKYRVNSQLDNTWVRNVYKIQGREPVMINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQG VLSIQKGAWYDPEDARVRNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRRLRRYELVKPYHSISTPSIIGA
Specific function: Terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI87081994, Length=803, Percent_Identity=37.4844333748443, Blast_Score=538, Evalue=1e-154, Organism=Escherichia coli, GI145693196, Length=770, Percent_Identity=38.5714285714286, Blast_Score=526, Evalue=1e-150, Organism=Escherichia coli, GI1787231, Length=774, Percent_Identity=39.6640826873385, Blast_Score=526, Evalue=1e-150, Organism=Escherichia coli, GI87081797, Length=757, Percent_Identity=31.8361955085865, Blast_Score=283, Evalue=2e-77, Organism=Escherichia coli, GI1787870, Length=756, Percent_Identity=30.952380952381, Blast_Score=267, Evalue=2e-72, Organism=Escherichia coli, GI171474008, Length=760, Percent_Identity=29.0789473684211, Blast_Score=250, Evalue=3e-67, Organism=Escherichia coli, GI3868721, Length=646, Percent_Identity=23.374613003096, Blast_Score=117, Evalue=3e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006658 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.7.2.3 [H]
Molecular weight: Translated: 90193; Mature: 90062
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISRRSILTKVPIALASTNVLKATGVFEKVESIPHATHFGPFIAKVQNGVIKDIIPQKS CCCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCC DYNPTMMLKAMVDRVYSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAK CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCCHHHHEEEHHHHHHHHHHH KLKEIPKENIYNASYGGWGHAGSLHRCHHLTWRFFNTTLGGAIGTDGEYSNGAAARINPM HHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCE IVGDMEVYSQQTTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKF EEECHHHHHHHCHHHHHHHCCEEEEEECCCEEEECCCCEECCCCCCCCCCCCHHHCCEEE ISIDPIYTETAQAFNAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLP EEECCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHH YLLGESDNAPKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWAL HHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECHHHHHHHHCCCCCCHHH IVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQGHNSVKSVIPASRISEAIL HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEHHCCCHHHHHHCCHHHHHHHHC NPDKEIDFMGKKLKLPKIKMIYNCGADLLGHEADTNELIRALRTLDCVIVHEPWWTPTAK CCCCCHHHCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHCEEEEECCCCCCCHH FADIVFASTSTMERDDITFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQLALRIGGNET HHHEEEECCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH EQKFTESKSYMEWIKSLYEKSDGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCC NNKLDTESGKIQIFSQKCADFKLADFKGYPTWFEPAEWLGSKMAETYPFHLISPHPKYRV CCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCC NSQLDNTWVRNVYKIQGREPVMINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQ CCCHHHHHHHHHHEECCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHHH GVLSIQKGAWYDPEDARVRNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRRLRRYE HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHH LVKPYHSISTPSIIGA HHCCHHCCCCCCCCCC >Mature Secondary Structure SISRRSILTKVPIALASTNVLKATGVFEKVESIPHATHFGPFIAKVQNGVIKDIIPQKS CCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCC DYNPTMMLKAMVDRVYSDSRVKYPCVRKSFLENKKNHKELRGREEFVRVSWDVALDLAAK CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCCHHHHEEEHHHHHHHHHHH KLKEIPKENIYNASYGGWGHAGSLHRCHHLTWRFFNTTLGGAIGTDGEYSNGAAARINPM HHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCE IVGDMEVYSQQTTHEEMIKNCKVYVMWGADLLKCNRIDYFVPNHVNDSYYPKYKRAGIKF EEECHHHHHHHCHHHHHHHCCEEEEEECCCEEEECCCCEECCCCCCCCCCCCHHHCCEEE ISIDPIYTETAQAFNAEWIPIRPNTDVALMLGMMHYLYTSNQYDKAFIAKYTDGFDKFLP EEECCCHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHH YLLGESDNAPKTLEWASQITGVSAEKIKELADLFVSKRTFLAGNWAMQRAQYGEQPDWAL HHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECHHHHHHHHCCCCCCHHH IVLASMIGQVGLSGGGFGFSMHYGGNAQASSGARIVPMISQGHNSVKSVIPASRISEAIL HHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEHHCCCHHHHHHCCHHHHHHHHC NPDKEIDFMGKKLKLPKIKMIYNCGADLLGHEADTNELIRALRTLDCVIVHEPWWTPTAK CCCCCHHHCCCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHCEEEEECCCCCCCHH FADIVFASTSTMERDDITFGGSYSKNVVYAMRKVVEPVYESKDDYEIFRQLALRIGGNET HHHEEEECCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHH EQKFTESKSYMEWIKSLYEKSDGPTLKSFDQFWRDGFVEFEIPENARKFVRHAKFRQDPI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCC NNKLDTESGKIQIFSQKCADFKLADFKGYPTWFEPAEWLGSKMAETYPFHLISPHPKYRV CCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCC NSQLDNTWVRNVYKIQGREPVMINELDANKLGIRHGEIVEVFNARGRLLAGAFVTKNIRQ CCCHHHHHHHHHHEECCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHHH GVLSIQKGAWYDPEDARVRNPRCNAGHVNTLTSLRPTSSMTQAISANTALVNIRRLRRYE HHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHH LVKPYHSISTPSIIGA HHCCHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8856102; 8890911; 8890912; 10835270; 10985771 [H]