Click here to switch to the map view.

The map label for this gene is yaaJ [C]

Identifier: 108563350

GI number: 108563350

Start: 968491

End: 969843

Strand: Reverse

Name: yaaJ [C]

Synonym: HPAG1_0925

Alternate gene names: 108563350

Gene position: 969843-968491 (Counterclockwise)

Preceding gene: 108563351

Following gene: 108563349

Centisome position: 60.75

GC content: 43.02

Gene sequence:

>1353_bases
ATGGAAACGATTGATTCGGTGGTGCGTTTATTATCCAATTTTGTGTGGGGGATTCCCATGCAAATCTTATTAGTAGGCAC
CGGCTTGTTTTTAACCTTTTATCTTAGGGGTTTGCAATTCAGTAAGATTTTTTATGCGATCAAAATCCTTTTTGACAAAG
AGTCCCAATCTAAGGGCGACATTTCGCAATTTTCTGCTCTCATGCTCTCTTTAGGGGCGACTGTAGGCATTGGGAGTATC
GTAGGCGTAGCGACCGCTATCAGCATTGCAGGGCCAGGAGCGGTGTTTTGGATGTGGGTTACTGGGCTTGTTGGCATGGC
GACTAAGTATTCTGAGGGGATTTTAGCGGTGAAATACCGGGAAAAGGGGGCGTTTGGATACAACGGAGGGCCTATGTATT
ACATCAAAAACGGCCTTAACATGCCCAAACTCGCCATGGCGTTTGCGATTTTTACGATTATTGCAAGCATTGGCACCGGT
AACATGACGCAATCTAATGCGGTTTCTTCCATTATGAGCGAACAAGCGAACTTGCCCACTTGGGTTTCAGGTTTATTGCT
CACGATTTTAACCGCTTTCATTGTCATTGGGGGGATTAAATCCATTGGTAAATTCACTTCTTACTTAGCTCCTGTTATGG
TGCTTTTATATTTGATCGCTATTATTTATATTATTGTTAGCCATTTTGATTTAGCCATTCAAGCGATCAAACTCATTTTT
GAAGAAGCCTTTAACCCTAAACCCGTTGTGGGCGGAGCGAGCGGCGCGTTGGTAGCGACAATGATAAAAACGGGCGTGGC
TAGGGGGTTGTATTCTAATGAAGCGGGGTTGGGGAGTTCAGCCATTATTGCTGCAAGCGCTCAAACGCGCCACCCGGTGC
GTCAAGCTTTAGTGTCCATGCTCCAAACTTTTATTGTAACTTTAGTGGTGTGTTCGGCAACAGCGAGCGTGATTTTAATG
GCGCCAGAATACAACACCTTGCTCCCTAATGGGGAAAAATTAAGCGCTAATTTGCTCACTCTAAAAAGCACGGAGTATTT
TCTAGGCTCATTAGGGACGGTGGTGATTTTTTTGACTATGATCTTTTTTGCCTACTCTACGATTATTGGTTGGGCTTATT
ATGGGGAAAAATGCACTGAATACGCTTTTGGTGAAAAAAAAGTGAAATATTACCGCTTGATCTTTTTAGCGAGCGTGATG
GTGGGGGCTATGGCTAAAATTGATTTTGTGTGGAATTTAGCGGATCTTTCTAACGGGCTTATGGCTATCCCTAATTTAAT
CGCTTTGATTTTATTGCATAAAGTGGTTTCTTCTGAAACTCGTTGGTATTTTAGCAAGCATTCTAACAAGTAA

Upstream 100 bases:

>100_bases
GACGGAGCGAATGAAAAAAATGCCGATATTATGCTTTTTTCTGCATTTTTTAGGGATTAAGGAATTTCTTTTTTAAACCC
TAGTTTGTTAAGGAGCTTTT

Downstream 100 bases:

>100_bases
GATGGCATGTTAAAAAGGGCGAGTTTTGTAGAAGTGAATAGCGCTTCTTTAAGGCATAATTTTAGCGCAGTCAAAAGCAT
TGTCCCTAAAGACGCCCACA

Product: D-alanine glycine permease

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
METIDSVVRLLSNFVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKILFDKESQSKGDISQFSALMLSLGATVGIGSI
VGVATAISIAGPGAVFWMWVTGLVGMATKYSEGILAVKYREKGAFGYNGGPMYYIKNGLNMPKLAMAFAIFTIIASIGTG
NMTQSNAVSSIMSEQANLPTWVSGLLLTILTAFIVIGGIKSIGKFTSYLAPVMVLLYLIAIIYIIVSHFDLAIQAIKLIF
EEAFNPKPVVGGASGALVATMIKTGVARGLYSNEAGLGSSAIIAASAQTRHPVRQALVSMLQTFIVTLVVCSATASVILM
APEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVIFLTMIFFAYSTIIGWAYYGEKCTEYAFGEKKVKYYRLIFLASVM
VGAMAKIDFVWNLADLSNGLMAIPNLIALILLHKVVSSETRWYFSKHSNK

Sequences:

>Translated_450_residues
METIDSVVRLLSNFVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKILFDKESQSKGDISQFSALMLSLGATVGIGSI
VGVATAISIAGPGAVFWMWVTGLVGMATKYSEGILAVKYREKGAFGYNGGPMYYIKNGLNMPKLAMAFAIFTIIASIGTG
NMTQSNAVSSIMSEQANLPTWVSGLLLTILTAFIVIGGIKSIGKFTSYLAPVMVLLYLIAIIYIIVSHFDLAIQAIKLIF
EEAFNPKPVVGGASGALVATMIKTGVARGLYSNEAGLGSSAIIAASAQTRHPVRQALVSMLQTFIVTLVVCSATASVILM
APEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVIFLTMIFFAYSTIIGWAYYGEKCTEYAFGEKKVKYYRLIFLASVM
VGAMAKIDFVWNLADLSNGLMAIPNLIALILLHKVVSSETRWYFSKHSNK
>Mature_450_residues
METIDSVVRLLSNFVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKILFDKESQSKGDISQFSALMLSLGATVGIGSI
VGVATAISIAGPGAVFWMWVTGLVGMATKYSEGILAVKYREKGAFGYNGGPMYYIKNGLNMPKLAMAFAIFTIIASIGTG
NMTQSNAVSSIMSEQANLPTWVSGLLLTILTAFIVIGGIKSIGKFTSYLAPVMVLLYLIAIIYIIVSHFDLAIQAIKLIF
EEAFNPKPVVGGASGALVATMIKTGVARGLYSNEAGLGSSAIIAASAQTRHPVRQALVSMLQTFIVTLVVCSATASVILM
APEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVIFLTMIFFAYSTIIGWAYYGEKCTEYAFGEKKVKYYRLIFLASVM
VGAMAKIDFVWNLADLSNGLMAIPNLIALILLHKVVSSETRWYFSKHSNK

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=443, Percent_Identity=33.8600451467269, Blast_Score=219, Evalue=3e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 48673; Mature: 48673

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METIDSVVRLLSNFVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKILFDKESQSKGD
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
ISQFSALMLSLGATVGIGSIVGVATAISIAGPGAVFWMWVTGLVGMATKYSEGILAVKYR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
EKGAFGYNGGPMYYIKNGLNMPKLAMAFAIFTIIASIGTGNMTQSNAVSSIMSEQANLPT
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCH
WVSGLLLTILTAFIVIGGIKSIGKFTSYLAPVMVLLYLIAIIYIIVSHFDLAIQAIKLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEAFNPKPVVGGASGALVATMIKTGVARGLYSNEAGLGSSAIIAASAQTRHPVRQALVSM
HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHH
LQTFIVTLVVCSATASVILMAPEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVIFLTM
HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH
IFFAYSTIIGWAYYGEKCTEYAFGEKKVKYYRLIFLASVMVGAMAKIDFVWNLADLSNGL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCH
MAIPNLIALILLHKVVSSETRWYFSKHSNK
HHHHHHHHHHHHHHHHCCCHHEEHHCCCCC
>Mature Secondary Structure
METIDSVVRLLSNFVWGIPMQILLVGTGLFLTFYLRGLQFSKIFYAIKILFDKESQSKGD
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
ISQFSALMLSLGATVGIGSIVGVATAISIAGPGAVFWMWVTGLVGMATKYSEGILAVKYR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
EKGAFGYNGGPMYYIKNGLNMPKLAMAFAIFTIIASIGTGNMTQSNAVSSIMSEQANLPT
CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCH
WVSGLLLTILTAFIVIGGIKSIGKFTSYLAPVMVLLYLIAIIYIIVSHFDLAIQAIKLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEAFNPKPVVGGASGALVATMIKTGVARGLYSNEAGLGSSAIIAASAQTRHPVRQALVSM
HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHH
LQTFIVTLVVCSATASVILMAPEYNTLLPNGEKLSANLLTLKSTEYFLGSLGTVVIFLTM
HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHH
IFFAYSTIIGWAYYGEKCTEYAFGEKKVKYYRLIFLASVMVGAMAKIDFVWNLADLSNGL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCH
MAIPNLIALILLHKVVSSETRWYFSKHSNK
HHHHHHHHHHHHHHHHCCCHHEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]