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The map label for this gene is hypC [H]

Identifier: 108563304

GI number: 108563304

Start: 918084

End: 918320

Strand: Reverse

Name: hypC [H]

Synonym: HPAG1_0879

Alternate gene names: 108563304

Gene position: 918320-918084 (Counterclockwise)

Preceding gene: 108563305

Following gene: 108563303

Centisome position: 57.53

GC content: 41.35

Gene sequence:

>237_bases
ATGTGTTTAGCGATCCCCTCTAAAGTCATAGCCATTAACGATAATGTGGCACTCTTGGAGACTTTGGGCGTTCAAAGAGA
AGCGAGCTTGGATTTAATGGGCGAGTCCGTTAAAGTGGGTGATTATGTGCTACTACACATCGGCTATGTGATGAGTAAGA
TTGATGAAAAAGAAGCCCTAGAATCCATTGAGCTTTATCAAGAAATGATCGCCAAAATGAACGAAACGCATGAATAA

Upstream 100 bases:

>100_bases
TTTTTTTAATGAGCTCTAAAGACCCTAAAAGCTTGGAAGATTTTAAAAACTTCCTTTTAGAAAAAAAGCGTGAAAATTAC
CAATCCACGCATTCGTTTTA

Downstream 100 bases:

>100_bases
ACGCATGCATAAAAACAATGAGCGTTGATCACCTCATTTCGCCCTTTAGGGACAAGCGAATTATTTTAGCGCTCTCTAAT
GCAATCAAAAAACTCGCTTT

Product: hydrogenase expression/formation protein HypC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MCLAIPSKVIAINDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIAKMNETHE

Sequences:

>Translated_78_residues
MCLAIPSKVIAINDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIAKMNETHE
>Mature_78_residues
MCLAIPSKVIAINDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIAKMNETHE

Specific function: Required for production of hydrogenase [H]

COG id: COG0298

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupF/hypC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019812
- InterPro:   IPR001109 [H]

Pfam domain/function: PF01455 HupF_HypC [H]

EC number: NA

Molecular weight: Translated: 8695; Mature: 8695

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: PS01097 HUPF_HYPC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLAIPSKVIAINDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEAL
CCCCCCCEEEEECCCCHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHH
ESIELYQEMIAKMNETHE
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MCLAIPSKVIAINDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEAL
CCCCCCCEEEEECCCCHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHH
ESIELYQEMIAKMNETHE
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12810954 [H]