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The map label for this gene is speE [H]

Identifier: 108563243

GI number: 108563243

Start: 852272

End: 853060

Strand: Reverse

Name: speE [H]

Synonym: HPAG1_0818

Alternate gene names: 108563243

Gene position: 853060-852272 (Counterclockwise)

Preceding gene: 108563244

Following gene: 108563242

Centisome position: 53.44

GC content: 35.99

Gene sequence:

>789_bases
ATGTGGATCACCCAAGAAATCACGCCGTATTTGCGTAAAGAATACACCATAGAAGCGAAATTATTAGATGTTAGAAGCGA
GCATAATATTTTAGAGATTTTTAAATCTAAAGATTTTGGCGAAATTGCGATGCTTAATTGCCAATTGTTGTTCAAGAATT
TTTTGCACATTGAAAGCGAGTTGCTCGCTCATATGGGGGGTTGCACTAAAAAAGAGCTTAAAGAAGTTTTGATTGTGGAT
GGGTTTGATTTGGAATTAGCCCACCAGCTTTTTAAATACGACACGCATATAGATTTTGTGCAAGCGGATGAAAAGATTTT
AGACAGCTTCATTAGTTTTTTCCCCCATTTCCATGAAGTGAAAAACAACAAGAATTTCACGCACGCTAAACAACTCTTAG
ATTTAGACATTAAAAAATACGATTTGATTCTTTGCTTGCAAGAGCCAGATATTCATAAAATGGATGGTTTAAAAAGAATG
CTTAAAGAAGATGGGGTGTTTATTTCTGTAGCCAAACACCCATTATTAGAGCATGTGAGCATGCAAAACGCCCTTAAAAA
CATGGGCGGAGTTTTTTCTGTTGCCATGCCTTTTGTAGCGCCTTTAAGGATTTTGAGCAACAAGGGTTATATTTACGCTT
CTTTTAAAACCCACCCCTTAAAAGATCTAATGACGCCAAAAATAGAAGCGCTAACAAGCATGAGATACTATAACGAAGAC
ATTCACAGGGCTGCATTCGCTTTGCCTAAAAATTTACAAGAAGTCTTTAAAGACAATATCAAATCTTAA

Upstream 100 bases:

>100_bases
GAAAGTTAGGGCGTTTATTACGACAATTTAGATTTTTTTGGGTAGCATGTTAGCGTTTCAAAGGCATGGATATTGTTAAA
AAGTAAGCTAAGGAATGTTT

Downstream 100 bases:

>100_bases
AATGGTTTTAAAAAACGCTATCGCTCTGACAGGGGGGATAGGCACCGGTAAAAGCACCACCATTAAAATATTAGAATCGC
AAGGCTATGAGATTTTAGAT

Product: spermidine synthase

Products: NA

Alternate protein names: Putrescine aminopropyltransferase; PAPT; SPDSY [H]

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNCQLLFKNFLHIESELLAHMGGCTKKELKEVLIVD
GFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLILCLQEPDIHKMDGLKRM
LKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKTHPLKDLMTPKIEALTSMRYYNED
IHRAAFALPKNLQEVFKDNIKS

Sequences:

>Translated_262_residues
MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNCQLLFKNFLHIESELLAHMGGCTKKELKEVLIVD
GFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLILCLQEPDIHKMDGLKRM
LKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKTHPLKDLMTPKIEALTSMRYYNED
IHRAAFALPKNLQEVFKDNIKS
>Mature_262_residues
MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNCQLLFKNFLHIESELLAHMGGCTKKELKEVLIVD
GFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLILCLQEPDIHKMDGLKRM
LKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKTHPLKDLMTPKIEALTSMRYYNED
IHRAAFALPKNLQEVFKDNIKS

Specific function: Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM), which serves as an aminopropyl donor [H]

COG id: COG0421

COG function: function code E; Spermidine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the spermidine/spermine synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001045 [H]

Pfam domain/function: PF01564 Spermine_synth [H]

EC number: =2.5.1.16 [H]

Molecular weight: Translated: 30474; Mature: 30474

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS51006 SPERMIDINE_SYNTHASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNCQLLFKNFLHIESE
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEV
HHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
KNNKNFTHAKQLLDLDIKKYDLILCLQEPDIHKMDGLKRMLKEDGVFISVAKHPLLEHVS
HCCCCHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHH
MQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKTHPLKDLMTPKIEALTSMRYYNED
HHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCHHHHHHHHHHHHHHH
IHRAAFALPKNLQEVFKDNIKS
HHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNCQLLFKNFLHIESE
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEV
HHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
KNNKNFTHAKQLLDLDIKKYDLILCLQEPDIHKMDGLKRMLKEDGVFISVAKHPLLEHVS
HCCCCHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHH
MQNALKNMGGVFSVAMPFVAPLRILSNKGYIYASFKTHPLKDLMTPKIEALTSMRYYNED
HHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCHHHHHHHHHHHHHHH
IHRAAFALPKNLQEVFKDNIKS
HHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA