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The map label for this gene is ywhC [H]

Identifier: 108562979

GI number: 108562979

Start: 571507

End: 572205

Strand: Reverse

Name: ywhC [H]

Synonym: HPAG1_0554

Alternate gene names: 108562979

Gene position: 572205-571507 (Counterclockwise)

Preceding gene: 108562980

Following gene: 108562978

Centisome position: 35.84

GC content: 41.49

Gene sequence:

>699_bases
GTGCAATTTTTTGATTTCTCTTTAGAAAGTTTTATTACCACCTTAATGAAAATCCTAGCCCTTTTAATCGCTATCATAGG
GCATGAGATCATGCATGGCTTGAGCGCGTTTTTATTCGGGGACAGGAGCGCTAAAAACGCTAATCGTTTGAGTTTAAACC
CTATCAGGCATTTAGACATGATGGGTTCGGTGCTTTTACCGGCTTTATTACTCATTTTTCAAGCCCCTTTTTTGTTTGGG
TGGGCCAAACCCGTGCCTGTGGATATGCGCTACATTGTCTCTCAAAAAGGCTCTTTGGCATGCGTAGTGGTGAGTTTAGC
CGGGGTGGCTTATAATTTCACCCTAGCCGTTCTGCTCGCTTTCATCACGCATTGGAGCTTCCAACAACTAGGGATCAACG
CTTTAAGCATCAATGAATTGAATCTTTATCAGCTCGCTTTAGTAACCTTTCTCATTCAAGGCATTCTTTATAATCTTGTC
TTAGGCGTTTTCAACAGCCTCCCTATCCCGCCCTTAGACGGCTCCAAAGCGTTAGGCTTTTTAGCGTTGCATTTTAAAAG
TTCGTTTTTATTGGAATGGTTTTCTAAAATGGAACGCTACGGCTTGTTGGTAGTGTTTATCTTTTTGTTTATCCCCCCTT
TATCGGAGTTTTTTATCCATGCGCCCACAAGATTTTTATTTTCCTTACTCCTTTCTTAA

Upstream 100 bases:

>100_bases
CCAAAAAACGCTATTTGGTGCGTTGGGAACGCATGTTTAAAAGCGTTGAAGGCTTAGAAAAAATCATTAAAAAAGAAAAA
GCAACGCATTAAGGTTTTTT

Downstream 100 bases:

>100_bases
TCTTTTATCAAGGAGGGCTGATGAATAAGCCTTTGAATATTGCTCAAGTTTTTATAGGAAGCGATCATGCAGGGTTGCAT
CTTGCAGAATTTGTTAAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MQFFDFSLESFITTLMKILALLIAIIGHEIMHGLSAFLFGDRSAKNANRLSLNPIRHLDMMGSVLLPALLLIFQAPFLFG
WAKPVPVDMRYIVSQKGSLACVVVSLAGVAYNFTLAVLLAFITHWSFQQLGINALSINELNLYQLALVTFLIQGILYNLV
LGVFNSLPIPPLDGSKALGFLALHFKSSFLLEWFSKMERYGLLVVFIFLFIPPLSEFFIHAPTRFLFSLLLS

Sequences:

>Translated_232_residues
MQFFDFSLESFITTLMKILALLIAIIGHEIMHGLSAFLFGDRSAKNANRLSLNPIRHLDMMGSVLLPALLLIFQAPFLFG
WAKPVPVDMRYIVSQKGSLACVVVSLAGVAYNFTLAVLLAFITHWSFQQLGINALSINELNLYQLALVTFLIQGILYNLV
LGVFNSLPIPPLDGSKALGFLALHFKSSFLLEWFSKMERYGLLVVFIFLFIPPLSEFFIHAPTRFLFSLLLS
>Mature_232_residues
MQFFDFSLESFITTLMKILALLIAIIGHEIMHGLSAFLFGDRSAKNANRLSLNPIRHLDMMGSVLLPALLLIFQAPFLFG
WAKPVPVDMRYIVSQKGSLACVVVSLAGVAYNFTLAVLLAFITHWSFQQLGINALSINELNLYQLALVTFLIQGILYNLV
LGVFNSLPIPPLDGSKALGFLALHFKSSFLLEWFSKMERYGLLVVFIFLFIPPLSEFFIHAPTRFLFSLLLS

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 26006; Mature: 26006

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFFDFSLESFITTLMKILALLIAIIGHEIMHGLSAFLFGDRSAKNANRLSLNPIRHLDM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
MGSVLLPALLLIFQAPFLFGWAKPVPVDMRYIVSQKGSLACVVVSLAGVAYNFTLAVLLA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
FITHWSFQQLGINALSINELNLYQLALVTFLIQGILYNLVLGVFNSLPIPPLDGSKALGF
HHHHCHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LALHFKSSFLLEWFSKMERYGLLVVFIFLFIPPLSEFFIHAPTRFLFSLLLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCC
>Mature Secondary Structure
MQFFDFSLESFITTLMKILALLIAIIGHEIMHGLSAFLFGDRSAKNANRLSLNPIRHLDM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
MGSVLLPALLLIFQAPFLFGWAKPVPVDMRYIVSQKGSLACVVVSLAGVAYNFTLAVLLA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
FITHWSFQQLGINALSINELNLYQLALVTFLIQGILYNLVLGVFNSLPIPPLDGSKALGF
HHHHCHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LALHFKSSFLLEWFSKMERYGLLVVFIFLFIPPLSEFFIHAPTRFLFSLLLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]