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The map label for this gene is ywlF [H]

Identifier: 108562978

GI number: 108562978

Start: 571025

End: 571486

Strand: Reverse

Name: ywlF [H]

Synonym: HPAG1_0553

Alternate gene names: 108562978

Gene position: 571486-571025 (Counterclockwise)

Preceding gene: 108562979

Following gene: 108562977

Centisome position: 35.8

GC content: 40.48

Gene sequence:

>462_bases
ATGAATAAGCCTTTGAATATTGCTCAAGTTTTTATAGGAAGCGATCATGCAGGGTTGCATCTTGCAGAATTTGTTAAACA
TTTTTTAGAAGACAAGGATTTTAAAATCCAAGCTTTTTTACCCACTATGAGGGTGGATTACCCTGATTACGCCAAATTAG
TGTGCCAAAAGGTCTTAGAAAATCCGCAAAGCTATGGCATTTTAGTGTGCGCCACAGGGATAGGCATGAGCATGGGCGCT
AATCGCTTTAAGGGTATTAGAGCCGCTTTGTGCCTTGATGCTTACATGGCTAAAATGACTCGCTTGCACAATAACGCTAA
TGTCTTGTGCTTGGGTGAAAAGATTAGCGGTATTGGCGTAACAGAAAGCATTTTAGAAGCGTTTTTCTCTACAGAATTTG
AACAAGGCCGCCATGTGTTGCGTATCCAAAAGCTAGATGAATTGCTGAAATCATCAACCTAA

Upstream 100 bases:

>100_bases
TCTTTTTGTTTATCCCCCCTTTATCGGAGTTTTTTATCCATGCGCCCACAAGATTTTTATTTTCCTTACTCCTTTCTTAA
TCTTTTATCAAGGAGGGCTG

Downstream 100 bases:

>100_bases
TGTAGTATAATTACATCGTTTCGCTAAAAGGATATTTTAATAGAATGTTTACCCAATGGTTTATCATCACTATCGCTATT
GTTTTTATCCTTTATATGGG

Product: ribose-5-phosphate isomerase B

Products: D-ribulose 5-phosphate

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MNKPLNIAQVFIGSDHAGLHLAEFVKHFLEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLENPQSYGILVCATGIGMSMGA
NRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKISGIGVTESILEAFFSTEFEQGRHVLRIQKLDELLKSST

Sequences:

>Translated_153_residues
MNKPLNIAQVFIGSDHAGLHLAEFVKHFLEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLENPQSYGILVCATGIGMSMGA
NRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKISGIGVTESILEAFFSTEFEQGRHVLRIQKLDELLKSST
>Mature_153_residues
MNKPLNIAQVFIGSDHAGLHLAEFVKHFLEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLENPQSYGILVCATGIGMSMGA
NRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKISGIGVTESILEAFFSTEFEQGRHVLRIQKLDELLKSST

Specific function: In Addition To Its Activity On D-Ribose 5-Phosphate It Probably Also Has Activity On D-Allose 6-Phosphate. [C]

COG id: COG0698

COG function: function code G; Ribose 5-phosphate isomerase RpiB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lacAB/rpiB family [H]

Homologues:

Organism=Escherichia coli, GI1790528, Length=142, Percent_Identity=35.9154929577465, Blast_Score=104, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003500
- InterPro:   IPR004785 [H]

Pfam domain/function: PF02502 LacAB_rpiB [H]

EC number: 5.3.1.6

Molecular weight: Translated: 17067; Mature: 17067

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPLNIAQVFIGSDHAGLHLAEFVKHFLEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLE
CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCHHCCCCCHHHHHHHHHHHC
NPQSYGILVCATGIGMSMGANRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKISGIGV
CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH
TESILEAFFSTEFEQGRHVLRIQKLDELLKSST
HHHHHHHHHHCHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKPLNIAQVFIGSDHAGLHLAEFVKHFLEDKDFKIQAFLPTMRVDYPDYAKLVCQKVLE
CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECCHHCCCCCHHHHHHHHHHHC
NPQSYGILVCATGIGMSMGANRFKGIRAALCLDAYMAKMTRLHNNANVLCLGEKISGIGV
CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH
TESILEAFFSTEFEQGRHVLRIQKLDELLKSST
HHHHHHHHHHCHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 4.4 {D-ribose} 0.83 {D-ribose} [C]

Substrates: D-ribose 5-phosphate

Specific reaction: D-ribose 5-phosphate = D-ribulose 5-phosphate

General reaction: Intramolecular oxidoreduction; Isomerization [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]