Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108562866

Identifier: 108562866

GI number: 108562866

Start: 453340

End: 455235

Strand: Reverse

Name: 108562866

Synonym: HPAG1_0441

Alternate gene names: NA

Gene position: 455235-453340 (Counterclockwise)

Preceding gene: 108562867

Following gene: 108562865

Centisome position: 28.52

GC content: 36.39

Gene sequence:

>1896_bases
ATGCCCTTTTTAAAAGCCCTAGAATCTTTTGATGTGCCCTATTTAGAAAAAGAAATTTCAAAGCGTTTTAGGGATAATTT
AGTTTTTTTCAAATCCTATCACCCCAATCTTTTTAACGCTCTCAATACGCCTTTTAAAAATTACCAATTGCTTTTTGAAA
AAAATCATCTTAATCTCTTACACACGCCCACGAACGCTTTAAGCTACCCTAAAAATCAAATGATAGAAACCGCTTTCAAC
ATGGCTTCTAACCCATTGAATAATCCCAGATACTCATTAGACAATAACCACCTCTCTTTACATTATTTAAAATCTCAAAA
CAACCCCAAACTCCCCCTAACCCTTAAAGCCACGCATGCGATCTCAAACTTTTTAGACAATTATCAAACGCCTTGCTCTT
TAAAGAAATTCTTACCCCCTACCATGATTTATGGCGTCTTAGACGGCTTGTTTTTGGCTATTTTACAGGCTCAAAATTAC
CGCTTCCATTCGCTTTATTTGTTTGAAGAAAATTTAGATTTGTTTAAAATCAGCTGTTATTTTGCGCGTTATGAAGATTT
GATCACAAAAGGGGCTAAACTCTTTATTCAAGGGTTTTTTAACCCCAATGAATTAAAAATGGATTTTTTGAAACGCCCCA
TCACGCATTCTTTTTTAAAGCTAGAAATCATGCCCTATAAAAGCGCTTTTAATTCGTGCATGCGAGAAAACATTCAAAGC
TATTACAAACAAGCCTTAAGGGGTTGGGGGAGTTTTGAAGATGAATTACTGGGATTAAAAAACACGCTTAAAAACTTACC
CTTATACCAAACTCTAAAGATTAAACCTAAAAAGATTAACGCCCCCATTTGCGTGGTGGGTAATGGGCCAAGCCTGGATT
TGTTGCTAGATTTTTTAAAAGAAAATGAAGATAATTTCATCATTTTTTCATGCGGAACCGCTTTAAAGCCTTTAAAAACG
CATGGCGTTAAAGTGGATTTTCAAATAGAAGTGGAGCGCATAGACTATCTTAAAGAGGTTTTAGAAAAAGCCCCCCTAGA
AGACACCCCCTTAATGGGAGCGAACATGCTCAATCCTAACGCTTTTAATTTAGCCAAAGAAGCGTTAATGTTTATGCGTG
GGGGGAGCGCTTGCGCGTATATAAGCCCTTTAAGTGTAGAATACGCAGCGCCTTTTGTGGGCAATGCCGGGGTGGCTTTA
GCGGGTTTGATGAGCGATGAAATTTATTTGTGCGCTTTAGATTGCGCTTATATTAAAGGGTTTAAAAAGCACGCTCAAAA
TTCCTATTATGAAAATGAAAAAGAAATTGACACTTCGTCTTTAATCAGCATAGAGAGCAATTTTAAAGGCTATGAAACTT
TTAGCGACTCGCTCTTTTTGCTCTCTAAAGAAAGGATTGAAGAAGCCCTTTATTATTACCAGCCTAAAAAAGTCTATAAT
CTAAGCTATGGGGCGAAAATCAAGCATGCTGTTAGCCTCAATCGCTCTCAAGTAAAATTGAAACATTCCAACAAACAAGA
AGCTATCGCTCGCATTAAAAGCATGTTTAGCCCTAGAAGTAATCATGCTAAGGATTTAAACAATTTACAAAAAAATCTGA
TTCGTTTTAAAGAGGATTTTTTCACGCAATTAAACACGCCCTGTAAAACCAAGCAAGAAATATTTGAATGGGTGGATAGT
TTGAGTGGGTTTTGCCAAACAATTAGCGCTAAAACCCCCACTATAGGCATTTTATTTGAAGGGAGTATCGCTCATATTTT
ACAAAGCGTTCTAATCGTTTCATTGCATCTTAAAGAAAATGAGCTGACGCATTTTATCAAATTCTCTCAAAACGCCTTAA
AACAATTCCTTAAAGAAGCCTGTTTATTATTGCAAATGCAACTCAAACAACCATGA

Upstream 100 bases:

>100_bases
GAACAAGATTTTATCTCTTTGAAAAAAATCGCCCTCGCTTCCCAACTTTTAGAAAATGATTTAAAAGACTCCTAAGGGGT
GTGATGAAAAAGGCCATTAC

Downstream 100 bases:

>100_bases
TTTTTATTTTTACATTATAATAACAACCTTAAATCAAAGGGGTGTTTATGCCATACAATGAAACCACAAGGGTTCAAATC
CCTGCCTTAATGCATTTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 631; Mature: 630

Protein sequence:

>631_residues
MPFLKALESFDVPYLEKEISKRFRDNLVFFKSYHPNLFNALNTPFKNYQLLFEKNHLNLLHTPTNALSYPKNQMIETAFN
MASNPLNNPRYSLDNNHLSLHYLKSQNNPKLPLTLKATHAISNFLDNYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNY
RFHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSCMRENIQS
YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKIKPKKINAPICVVGNGPSLDLLLDFLKENEDNFIIFSCGTALKPLKT
HGVKVDFQIEVERIDYLKEVLEKAPLEDTPLMGANMLNPNAFNLAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVAL
AGLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDTSSLISIESNFKGYETFSDSLFLLSKERIEEALYYYQPKKVYN
LSYGAKIKHAVSLNRSQVKLKHSNKQEAIARIKSMFSPRSNHAKDLNNLQKNLIRFKEDFFTQLNTPCKTKQEIFEWVDS
LSGFCQTISAKTPTIGILFEGSIAHILQSVLIVSLHLKENELTHFIKFSQNALKQFLKEACLLLQMQLKQP

Sequences:

>Translated_631_residues
MPFLKALESFDVPYLEKEISKRFRDNLVFFKSYHPNLFNALNTPFKNYQLLFEKNHLNLLHTPTNALSYPKNQMIETAFN
MASNPLNNPRYSLDNNHLSLHYLKSQNNPKLPLTLKATHAISNFLDNYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNY
RFHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSCMRENIQS
YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKIKPKKINAPICVVGNGPSLDLLLDFLKENEDNFIIFSCGTALKPLKT
HGVKVDFQIEVERIDYLKEVLEKAPLEDTPLMGANMLNPNAFNLAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVAL
AGLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDTSSLISIESNFKGYETFSDSLFLLSKERIEEALYYYQPKKVYN
LSYGAKIKHAVSLNRSQVKLKHSNKQEAIARIKSMFSPRSNHAKDLNNLQKNLIRFKEDFFTQLNTPCKTKQEIFEWVDS
LSGFCQTISAKTPTIGILFEGSIAHILQSVLIVSLHLKENELTHFIKFSQNALKQFLKEACLLLQMQLKQP
>Mature_630_residues
PFLKALESFDVPYLEKEISKRFRDNLVFFKSYHPNLFNALNTPFKNYQLLFEKNHLNLLHTPTNALSYPKNQMIETAFNM
ASNPLNNPRYSLDNNHLSLHYLKSQNNPKLPLTLKATHAISNFLDNYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYR
FHSLYLFEENLDLFKISCYFARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSCMRENIQSY
YKQALRGWGSFEDELLGLKNTLKNLPLYQTLKIKPKKINAPICVVGNGPSLDLLLDFLKENEDNFIIFSCGTALKPLKTH
GVKVDFQIEVERIDYLKEVLEKAPLEDTPLMGANMLNPNAFNLAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALA
GLMSDEIYLCALDCAYIKGFKKHAQNSYYENEKEIDTSSLISIESNFKGYETFSDSLFLLSKERIEEALYYYQPKKVYNL
SYGAKIKHAVSLNRSQVKLKHSNKQEAIARIKSMFSPRSNHAKDLNNLQKNLIRFKEDFFTQLNTPCKTKQEIFEWVDSL
SGFCQTISAKTPTIGILFEGSIAHILQSVLIVSLHLKENELTHFIKFSQNALKQFLKEACLLLQMQLKQP

Specific function: Unknown

COG id: COG2604

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 72457; Mature: 72326

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFLKALESFDVPYLEKEISKRFRDNLVFFKSYHPNLFNALNTPFKNYQLLFEKNHLNLL
CCHHHHHHHCCCCHHHHHHHHHHHHCEEEEECCCCHHHHHHCCCCCCEEEEEEECCCEEE
HTPTNALSYPKNQMIETAFNMASNPLNNPRYSLDNNHLSLHYLKSQNNPKLPLTLKATHA
ECCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEHHHH
ISNFLDNYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYRFHSLYLFEENLDLFKISCY
HHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEHHH
FARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSCMRENIQS
HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHCCEEEEEEEEHHHHHHHHHHHHHHH
YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKIKPKKINAPICVVGNGPSLDLLLDFLK
HHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHH
ENEDNFIIFSCGTALKPLKTHGVKVDFQIEVERIDYLKEVLEKAPLEDTPLMGANMLNPN
CCCCCEEEEECCCCCCCHHHCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
AFNLAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALAGLMSDEIYLCALDCAYIKG
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEHHHHHHH
FKKHAQNSYYENEKEIDTSSLISIESNFKGYETFSDSLFLLSKERIEEALYYYQPKKVYN
HHHHHCCCCCCCCCCCCHHHEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEE
LSYGAKIKHAVSLNRSQVKLKHSNKQEAIARIKSMFSPRSNHAKDLNNLQKNLIRFKEDF
CCCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FTQLNTPCKTKQEIFEWVDSLSGFCQTISAKTPTIGILFEGSIAHILQSVLIVSLHLKEN
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHEECCCH
ELTHFIKFSQNALKQFLKEACLLLQMQLKQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PFLKALESFDVPYLEKEISKRFRDNLVFFKSYHPNLFNALNTPFKNYQLLFEKNHLNLL
CHHHHHHHCCCCHHHHHHHHHHHHCEEEEECCCCHHHHHHCCCCCCEEEEEEECCCEEE
HTPTNALSYPKNQMIETAFNMASNPLNNPRYSLDNNHLSLHYLKSQNNPKLPLTLKATHA
ECCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEHHHH
ISNFLDNYQTPCSLKKFLPPTMIYGVLDGLFLAILQAQNYRFHSLYLFEENLDLFKISCY
HHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEHHH
FARYEDLITKGAKLFIQGFFNPNELKMDFLKRPITHSFLKLEIMPYKSAFNSCMRENIQS
HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHCCEEEEEEEEHHHHHHHHHHHHHHH
YYKQALRGWGSFEDELLGLKNTLKNLPLYQTLKIKPKKINAPICVVGNGPSLDLLLDFLK
HHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCCHHHHHHHHH
ENEDNFIIFSCGTALKPLKTHGVKVDFQIEVERIDYLKEVLEKAPLEDTPLMGANMLNPN
CCCCCEEEEECCCCCCCHHHCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
AFNLAKEALMFMRGGSACAYISPLSVEYAAPFVGNAGVALAGLMSDEIYLCALDCAYIKG
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEEHHHHHHH
FKKHAQNSYYENEKEIDTSSLISIESNFKGYETFSDSLFLLSKERIEEALYYYQPKKVYN
HHHHHCCCCCCCCCCCCHHHEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEE
LSYGAKIKHAVSLNRSQVKLKHSNKQEAIARIKSMFSPRSNHAKDLNNLQKNLIRFKEDF
CCCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
FTQLNTPCKTKQEIFEWVDSLSGFCQTISAKTPTIGILFEGSIAHILQSVLIVSLHLKEN
HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHEECCCH
ELTHFIKFSQNALKQFLKEACLLLQMQLKQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA