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The map label for this gene is yqxC [H]

Identifier: 108562786

GI number: 108562786

Start: 373987

End: 374694

Strand: Reverse

Name: yqxC [H]

Synonym: HPAG1_0361

Alternate gene names: 108562786

Gene position: 374694-373987 (Counterclockwise)

Preceding gene: 108562787

Following gene: 108562785

Centisome position: 23.47

GC content: 36.72

Gene sequence:

>708_bases
ATGCGCTTAGATTACGCTTTATTCAACCAGCATTTAGTGAGCAGCAGAGAAAAAGCTAAAGCGTTGGTTTTAAAAAATCA
GGTTTTAGTCAATAAAATGGTGGTTTCTAAACCCTCTTTTATCATTAAAGAGGGTGATCAAATTGAACTCATCGCTCCCA
ATCCATTCGTTAGCAGGGCTGGGGAAAAATTAGGGGCTTTTTTAGAAGAACATTTTATAGATTTTAAAGAAAAGGTCGTT
TTAGACGTGGGAGCGAGTAAGGGGGGCTTTAGTCAAGTGGCTCTTTTAAAAGGGGCTAAAAAGGTGCTTTGCGTGGATGT
GGGGAAAATGCAATTAGATGAGAGTTTGAAACAAGACAAGCGCATAGAATGTTACGAAGAATGCGATATTAGAGGGTTTA
AAACGCCAGAAACAATTGATTTAGCGCTTTGCGATGTGAGCTTTATTTCTTTATATTGTATTTTAGAAGCGATTTTGCCT
TTAAGCGATGAATTTTTGGCGCTTTTCAAACCGCAATTTGAAGTGGGCAGAGAAATAAAACGCAATAAAAAGGGGGTGGT
AATGGATAAAGAAGCCATTTTGAACGCTTTAGAAAACTTTAAAAACCATTTAAAAACAAAGGATTTTCAAATCTTAGAGA
TCCAAGAAAGCTTAGTGAAAGGGAAAAACGGGAATGTTGAATTTTTTATCCATTTCAAGCGAGCCTAA

Upstream 100 bases:

>100_bases
ATTATTTAGCGGTGCAAGAAGCCAAACTAGAGCTTGATGCCTATAGTTTAGGCAAGATTGTTTTTAATTTCGCTTATCAA
GTCCCCCTACCTCAATTTTA

Downstream 100 bases:

>100_bases
AATTAAAAGCCTGGCTATCGGTAAATTTGACGGCTTGCATTTAGGGCATCAAGCCCTTTTTAAAGAATTAAAAGATCCCA
AAGCCCTTTTAATCATAGAA

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MRLDYALFNQHLVSSREKAKALVLKNQVLVNKMVVSKPSFIIKEGDQIELIAPNPFVSRAGEKLGAFLEEHFIDFKEKVV
LDVGASKGGFSQVALLKGAKKVLCVDVGKMQLDESLKQDKRIECYEECDIRGFKTPETIDLALCDVSFISLYCILEAILP
LSDEFLALFKPQFEVGREIKRNKKGVVMDKEAILNALENFKNHLKTKDFQILEIQESLVKGKNGNVEFFIHFKRA

Sequences:

>Translated_235_residues
MRLDYALFNQHLVSSREKAKALVLKNQVLVNKMVVSKPSFIIKEGDQIELIAPNPFVSRAGEKLGAFLEEHFIDFKEKVV
LDVGASKGGFSQVALLKGAKKVLCVDVGKMQLDESLKQDKRIECYEECDIRGFKTPETIDLALCDVSFISLYCILEAILP
LSDEFLALFKPQFEVGREIKRNKKGVVMDKEAILNALENFKNHLKTKDFQILEIQESLVKGKNGNVEFFIHFKRA
>Mature_235_residues
MRLDYALFNQHLVSSREKAKALVLKNQVLVNKMVVSKPSFIIKEGDQIELIAPNPFVSRAGEKLGAFLEEHFIDFKEKVV
LDVGASKGGFSQVALLKGAKKVLCVDVGKMQLDESLKQDKRIECYEECDIRGFKTPETIDLALCDVSFISLYCILEAILP
LSDEFLALFKPQFEVGREIKRNKKGVVMDKEAILNALENFKNHLKTKDFQILEIQESLVKGKNGNVEFFIHFKRA

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26640; Mature: 26640

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDYALFNQHLVSSREKAKALVLKNQVLVNKMVVSKPSFIIKEGDQIELIAPNPFVSRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHHHHH
GEKLGAFLEEHFIDFKEKVVLDVGASKGGFSQVALLKGAKKVLCVDVGKMQLDESLKQDK
HHHHHHHHHHHHHCHHHHEEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHCC
RIECYEECDIRGFKTPETIDLALCDVSFISLYCILEAILPLSDEFLALFKPQFEVGREIK
CCCHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
RNKKGVVMDKEAILNALENFKNHLKTKDFQILEIQESLVKGKNGNVEFFIHFKRA
HCCCCCEECHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MRLDYALFNQHLVSSREKAKALVLKNQVLVNKMVVSKPSFIIKEGDQIELIAPNPFVSRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHHHHH
GEKLGAFLEEHFIDFKEKVVLDVGASKGGFSQVALLKGAKKVLCVDVGKMQLDESLKQDK
HHHHHHHHHHHHHCHHHHEEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHCC
RIECYEECDIRGFKTPETIDLALCDVSFISLYCILEAILPLSDEFLALFKPQFEVGREIK
CCCHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHH
RNKKGVVMDKEAILNALENFKNHLKTKDFQILEIQESLVKGKNGNVEFFIHFKRA
HCCCCCEECHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]