Click here to switch to the map view.

The map label for this gene is frdC [H]

Identifier: 108562612

GI number: 108562612

Start: 194228

End: 194995

Strand: Reverse

Name: frdC [H]

Synonym: HPAG1_0187

Alternate gene names: 108562612

Gene position: 194995-194228 (Counterclockwise)

Preceding gene: 108562623

Following gene: 108562611

Centisome position: 12.21

GC content: 40.1

Gene sequence:

>768_bases
ATGCAACAAGAAGAGATTATAGAGGGTTATTATGGCGCTAGCAAAGGGCTTAAAAAGAGCGGTATTTATGCCAAGCTGGA
TTTTTTACAGAGCGCTACGGGCTTGATTTTAGCACTCTTTATGATAGCACACATGTTTTTAGTCTCAAGTATCTTGATTA
GCGATGAAGCCATGTATAAAGTGGCGAAATTTTTTGAAGGGAGCTTGTTTTTAAAAGCGGGCGAGCCGGCTATTGTGAGC
GTGGTTGCAGCAGGAGTTATTCTTATTTTAGTCGCGCATGCTTTTTTGGCGTTAAGGAAATTCCCTATCAATTACAGGCA
ATACAAGGTTTTTAAAACCCATAAGCATTTGATGAAACATGGCGATACGAGCTTGTGGTTTATTCAAGCTCTCACCGGGT
TTGCGATGTTTTTTTTAGCGAGTATCCACCTATTTGTCATGCTCACAGAACCTGAAAGTATCGGGCCTCATGGCTCAAGC
TATCGTTTTGTAACGCAAAACTTTTGGCTTTTGTATATTTTCTTATTGTTTGCCGTAGAATTGCACGGCTCTATTGGGTT
GTATCGCTTAGCGATTAAATGGGGGTGGTTTAAGAATGCGAGCATTCAAGGCTTGAGAAAAGTCAAATGGGCGATGAGCG
TGTTTTTTATTGTTTTAGGGCTTTGCACCTATGGGGCTTACATTAAAAAAGGTTTAGAAAATAAGGACAATGGCATTAAA
ACCATGCAAGAAGCCATAGAAGCTGATGGGAAATTCCACAAAGAATAA

Upstream 100 bases:

>100_bases
TTTTGTTTATAAGAAAAATTATTTCAAATGTAGTAAAATTAAGGCAGTGTTTTTGCGTCAAGCGATTTTAGGTTAATTTT
GAGTTTTAGGAGCAGTTTTT

Downstream 100 bases:

>100_bases
GGGTAGAAAATGAAAATAACATATTGTGATGCGCTAATTATTGGAGGCGGGCTGGCCGGGTTAAGGGCTAGTATCGCATG
CAAACAAAAGGGTTTAAACA

Product: fumarate reductase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYKVAKFFEGSLFLKAGEPAIVS
VVAAGVILILVAHAFLALRKFPINYRQYKVFKTHKHLMKHGDTSLWFIQALTGFAMFFLASIHLFVMLTEPESIGPHGSS
YRFVTQNFWLLYIFLLFAVELHGSIGLYRLAIKWGWFKNASIQGLRKVKWAMSVFFIVLGLCTYGAYIKKGLENKDNGIK
TMQEAIEADGKFHKE

Sequences:

>Translated_255_residues
MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYKVAKFFEGSLFLKAGEPAIVS
VVAAGVILILVAHAFLALRKFPINYRQYKVFKTHKHLMKHGDTSLWFIQALTGFAMFFLASIHLFVMLTEPESIGPHGSS
YRFVTQNFWLLYIFLLFAVELHGSIGLYRLAIKWGWFKNASIQGLRKVKWAMSVFFIVLGLCTYGAYIKKGLENKDNGIK
TMQEAIEADGKFHKE
>Mature_255_residues
MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYKVAKFFEGSLFLKAGEPAIVS
VVAAGVILILVAHAFLALRKFPINYRQYKVFKTHKHLMKHGDTSLWFIQALTGFAMFFLASIHLFVMLTEPESIGPHGSS
YRFVTQNFWLLYIFLLFAVELHGSIGLYRLAIKWGWFKNASIQGLRKVKWAMSVFFIVLGLCTYGAYIKKGLENKDNGIK
TMQEAIEADGKFHKE

Specific function: Di-heme cytochrome of the fumarate reductase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004224
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 28831; Mature: 28831

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYK
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAKFFEGSLFLKAGEPAIVSVVAAGVILILVAHAFLALRKFPINYRQYKVFKTHKHLMKH
HHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
GDTSLWFIQALTGFAMFFLASIHLFVMLTEPESIGPHGSSYRFVTQNFWLLYIFLLFAVE
CCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
LHGSIGLYRLAIKWGWFKNASIQGLRKVKWAMSVFFIVLGLCTYGAYIKKGLENKDNGIK
HCCCCHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
TMQEAIEADGKFHKE
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MQQEEIIEGYYGASKGLKKSGIYAKLDFLQSATGLILALFMIAHMFLVSSILISDEAMYK
CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAKFFEGSLFLKAGEPAIVSVVAAGVILILVAHAFLALRKFPINYRQYKVFKTHKHLMKH
HHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
GDTSLWFIQALTGFAMFFLASIHLFVMLTEPESIGPHGSSYRFVTQNFWLLYIFLLFAVE
CCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
LHGSIGLYRLAIKWGWFKNASIQGLRKVKWAMSVFFIVLGLCTYGAYIKKGLENKDNGIK
HCCCCHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
TMQEAIEADGKFHKE
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]