| Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
|---|---|
| Accession | NC_008086 |
| Length | 1,596,366 |
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The map label for this gene is 108562581
Identifier: 108562581
GI number: 108562581
Start: 162312
End: 163268
Strand: Direct
Name: 108562581
Synonym: HPAG1_0156
Alternate gene names: NA
Gene position: 162312-163268 (Clockwise)
Preceding gene: 108562580
Following gene: 108562583
Centisome position: 10.17
GC content: 40.75
Gene sequence:
>957_bases ATGTTGAGTAGAGACATTGTCCAATATTCCAAGATCCGCACCGAGCTATACGCTTATCTTACCTATTTGTTTTCGCACAA TATCCGCAACCATCTCCCTGAAATCACTTTGGATTATTTAAACAAACAGATCAGAAAAATGCACGCTGAAATCAAAATGG CAAAAAGTTTTTTTGTGTTAGACGCTAAAGGCATGCTAATTCTTAAGCCAAGCCAGCTTAAAGAACAGGGGCATAAGGAG GGGATATTAGAGCATGATTTAACAGAAGGGATTGAATTAGAATCACATGCCAGCTTTAGCGATAAGTATTATTTTTATCA AGCCGTGAGTGAAAAGCGTTGCATTTTAACAGACCCCTATCCTTCTAAAAAAGGAAACCATTTGGTAGTGAGTGCGTCTT ACCCGGTGTATGATCAAAATAACGATCTGGTGTTTGTGGTGTGCTTGCAAATCCCTTTGAGGGTGGCGATTGAGATTAGC TCGCCTTCAAAGTATTTCAGGACCTTTAGCGAAGGGAGCATGGTCATGTATTTTATGATTTCTATCATGCTCACTTTAGT GTCGTTGCTTTTATTTGTGAAATGCATTTCTAGCTTTTGGACAGCGATTGTCAATTTTAGCAGCTTTGACATTAAAGAAG TGTTCCACCCCATTGTGCTTTTAACCCTAGCCTTAGCCACCTTTGATCTAGTCAAGGCGATTTTTGAAGAGGAAGTTTTA GGTAAAAATAGCGGGGACAACCACCATGCGATCCACCGCACGATGATCAGGTTTTTAGGCTCTATCATTATCGCCTTAGC CATTGAAGCGTTAATGTTAGTGTTTAAATTCAGCGTGAGCGAACCGGATAAAATCACTTATGCGGTGTATTTGGCTGTCG GCGTGGCGGTGCTTTTGATCAGTTTAGCGATTTATGTCAAATTCGCTTATAGCGTGTTGCCCAAACGAGAACGCTAA
Upstream 100 bases:
>100_bases AAAAAAACGCCTCCTTTATCATTGATGCAAGGGGTGGTTTAAACAATTCTTTAAAACAAGTGCTACAATTCATCGCATAA ATTTTTTTAAAGGCCTTTTG
Downstream 100 bases:
>100_bases GAGTTAAAGAATTTTTCTTTTAAGCGTTTGAAAATCCTATTCAATCTAAAAAAGACATATTCTAAAAGGGTTTTTTTATT GAGTAGGGGGGCAAGAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: General Glycosylation Pathway Protein PglG; Cache Domain Protein; Inner Membrane Protein
Number of amino acids: Translated: 318; Mature: 318
Protein sequence:
>318_residues MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKSFFVLDAKGMLILKPSQLKEQGHKE GILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPYPSKKGNHLVVSASYPVYDQNNDLVFVVCLQIPLRVAIEIS SPSKYFRTFSEGSMVMYFMISIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLISLAIYVKFAYSVLPKRER
Sequences:
>Translated_318_residues MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKSFFVLDAKGMLILKPSQLKEQGHKE GILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPYPSKKGNHLVVSASYPVYDQNNDLVFVVCLQIPLRVAIEIS SPSKYFRTFSEGSMVMYFMISIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLISLAIYVKFAYSVLPKRER >Mature_318_residues MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKSFFVLDAKGMLILKPSQLKEQGHKE GILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPYPSKKGNHLVVSASYPVYDQNNDLVFVVCLQIPLRVAIEIS SPSKYFRTFSEGSMVMYFMISIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLISLAIYVKFAYSVLPKRER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36393; Mature: 36393
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKSFFVL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHEEE DAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPY ECCCEEEECHHHHHHCHHHCCCHHHHHHCCCCCCCCCCCCCCHHHEEHHCCCCEEEECCC PSKKGNHLVVSASYPVYDQNNDLVFVVCLQIPLRVAIEISSPSKYFRTFSEGSMVMYFMI CCCCCCEEEEEECCCEEECCCCEEEEEEEECCEEEEEEECCCHHHHHHHCCCCHHHHHHH SIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH SLAIYVKFAYSVLPKRER HHHHHHHHHHHHCCCCCC >Mature Secondary Structure MLSRDIVQYSKIRTELYAYLTYLFSHNIRNHLPEITLDYLNKQIRKMHAEIKMAKSFFVL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHEEE DAKGMLILKPSQLKEQGHKEGILEHDLTEGIELESHASFSDKYYFYQAVSEKRCILTDPY ECCCEEEECHHHHHHCHHHCCCHHHHHHCCCCCCCCCCCCCCHHHEEHHCCCCEEEECCC PSKKGNHLVVSASYPVYDQNNDLVFVVCLQIPLRVAIEISSPSKYFRTFSEGSMVMYFMI CCCCCCEEEEEECCCEEECCCCEEEEEEEECCEEEEEEECCCHHHHHHHCCCCHHHHHHH SIMLTLVSLLLFVKCISSFWTAIVNFSSFDIKEVFHPIVLLTLALATFDLVKAIFEEEVL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKNSGDNHHAIHRTMIRFLGSIIIALAIEALMLVFKFSVSEPDKITYAVYLAVGVAVLLI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH SLAIYVKFAYSVLPKRER HHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA