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The map label for this gene is 108562568

Identifier: 108562568

GI number: 108562568

Start: 153461

End: 154159

Strand: Direct

Name: 108562568

Synonym: HPAG1_0143

Alternate gene names: NA

Gene position: 153461-154159 (Clockwise)

Preceding gene: 108562567

Following gene: 108562569

Centisome position: 9.61

GC content: 43.35

Gene sequence:

>699_bases
ATGTTTAGTTTTTTAGAGAAAAACCCGTTCTTTTTCACGCTTGCGTTTATTTTTGTGTTTGCGATCGCGGGCTTGGTGGA
GATTTTGCCCAACTTTTTTAAATCCGCTCGCCCCATTGAAGGCTTACGGCCTTATACGGTTTTAGAGACAGCAGGGAGGC
AAATTTATATCCAAGAAGGTTGTTATCATTGCCATTCCCAGCTTATTCGCCCTTTTCAAGCTGAGGTGGATCGATATGGC
GCGTATAGTTTGAGTGGGGAATATGCGTATGACAGGCCATTTTTATGGGGATCTAAAAGGATTGGCCCTGATTTGCACAG
GGTGGGGGATTATCGCACAACCGATTGGCATGAAAAGCACATGTTTGATCCTAAAAGCGTTGTGCCGCACAGCATCATGC
CCGCTTATAAGCATTTATTCATAAAAAAGAGCGACTTTGACACCGCTTATGCAGAAGCTTTGACGCAAAAAAAGGTTTTT
GGCGTGCCTTATGACACAGAAAACGGCGTGAAATTAGGGAGCGTAGAAGAAGCGAAAAAAGCCTATTTAGAAGAAGCTAA
AAAAATCACAGCCGACATGAAAGACAAGAGGGTGCTAGAAGCGATTGAGAGAGGCGAAGTGTTAGAAATTGTGGCTTTGA
TCGCTTATCTCAACAGCTTGGGTAATTCCAGGATCAACGCCAATCAAAACGCTAAATAA

Upstream 100 bases:

>100_bases
TATTTTTGCTTACAATATTTTTATGACCATCACGGCAGGCAAAAAATTAGAGCGTGAGCCCAATTACGCCACGCCTATGT
CTCGATAGGGGAGGTTGGAA

Downstream 100 bases:

>100_bases
GGGGTGAATGATGGATTTAGAAAGTTTGAGAGGTTTTGCGTATGCGTTTTTTACCATTCTTTTTACGCTCTTTTTGTATG
CCTATATTTTTAGCATGTAT

Product: cbb3-type cytochrome c oxidase subunit II

Products: ferricytochrome c; H2O

Alternate protein names: Cbb3-Type Cytochrome C Oxidase Subunit II; Cytochrome C Oxidase Mono-Heme Subunit/FixO; Cytochrome C Oxidase Cbb3-Type Subunit I; Cb-Type Cytochrome C Oxidase Subunit II; Cbb3-Type Cytochrome Oxidase Cytochrome C Subunit; Cytochrome C Oxidase; Bifunctional Cbb3-Type Cytochrome C Oxidase Subunit I/II; Cytochrome Oxidase Subunit; Cytochrome C Oxidase Subunit; Cytochrome-C Oxidase FixO Chain; Cytochrome-C Oxidase Subunit II; Cytochrome C Oxidase Subunit CcoO; Bifunctional Cytochrome C Oxidase Subunit SccoN/O; Cytochrome-Cbb3 Oxidase Subunit I; Transmembrane Cytochrome C Oxidase FixO Protein; Cbb3-Type Cytochrome Oxidase; Cbb3-Type Cytochrome C Oxidase Subunit CcoO; Cbb3-Type Cytochrome C Oxidase Subunit I + II; Cytochrome C Oxidase Subunit CcoN; Cytochrome C Oxidase Cbb3-Type Subunit I/Mono-Heme Subunit; Cytochrome C Oxidase FixO Chain; Cytochrome C Oxidase Mono-Heme Subunit/FixO Superfamily; Cytochrome-Cbb3 Oxidase Subunit II; Cytochrome C Family Protein; Cytochrome C Oxidase CcoO Subunit; Cbb3-Type Cytochrome C Oxidase Subunits CcoN/CcoO; Cytochrome Oxidase; Cytochrome C Oxidase Mono-Heme Subunit; Cytochrome C Oxidase Cbb3-Type; Cytochrome C Oxidase Cbb3-Type Mono-Heme Subunit II; Cytochrome Cbb3 Oxidase Subunit I/III; Cytochrome C Oxidase Cbb3-Type Subunit I And II; Cytochrome Oxidase Cytochrome C Subunit

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MFSFLEKNPFFFTLAFIFVFAIAGLVEILPNFFKSARPIEGLRPYTVLETAGRQIYIQEGCYHCHSQLIRPFQAEVDRYG
AYSLSGEYAYDRPFLWGSKRIGPDLHRVGDYRTTDWHEKHMFDPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVF
GVPYDTENGVKLGSVEEAKKAYLEEAKKITADMKDKRVLEAIERGEVLEIVALIAYLNSLGNSRINANQNAK

Sequences:

>Translated_232_residues
MFSFLEKNPFFFTLAFIFVFAIAGLVEILPNFFKSARPIEGLRPYTVLETAGRQIYIQEGCYHCHSQLIRPFQAEVDRYG
AYSLSGEYAYDRPFLWGSKRIGPDLHRVGDYRTTDWHEKHMFDPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVF
GVPYDTENGVKLGSVEEAKKAYLEEAKKITADMKDKRVLEAIERGEVLEIVALIAYLNSLGNSRINANQNAK
>Mature_232_residues
MFSFLEKNPFFFTLAFIFVFAIAGLVEILPNFFKSARPIEGLRPYTVLETAGRQIYIQEGCYHCHSQLIRPFQAEVDRYG
AYSLSGEYAYDRPFLWGSKRIGPDLHRVGDYRTTDWHEKHMFDPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVF
GVPYDTENGVKLGSVEEAKKAYLEEAKKITADMKDKRVLEAIERGEVLEIVALIAYLNSLGNSRINANQNAK

Specific function: Unknown

COG id: COG2993

COG function: function code C; Cbb3-type cytochrome oxidase, cytochrome c subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.9.3.1

Molecular weight: Translated: 26561; Mature: 26561

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSFLEKNPFFFTLAFIFVFAIAGLVEILPNFFKSARPIEGLRPYTVLETAGRQIYIQEG
CCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEEHHH
CYHCHSQLIRPFQAEVDRYGAYSLSGEYAYDRPFLWGSKRIGPDLHRVGDYRTTDWHEKH
HHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHH
MFDPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVFGVPYDTENGVKLGSVEEAKK
CCCCHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCHHHHHH
AYLEEAKKITADMKDKRVLEAIERGEVLEIVALIAYLNSLGNSRINANQNAK
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MFSFLEKNPFFFTLAFIFVFAIAGLVEILPNFFKSARPIEGLRPYTVLETAGRQIYIQEG
CCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEEHHH
CYHCHSQLIRPFQAEVDRYGAYSLSGEYAYDRPFLWGSKRIGPDLHRVGDYRTTDWHEKH
HHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHH
MFDPKSVVPHSIMPAYKHLFIKKSDFDTAYAEALTQKKVFGVPYDTENGVKLGSVEEAKK
CCCCHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCHHHHHH
AYLEEAKKITADMKDKRVLEAIERGEVLEIVALIAYLNSLGNSRINANQNAK
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ferrocytochrome c; O2

Specific reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA