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The map label for this gene is ykgF [H]

Identifier: 108562561

GI number: 108562561

Start: 143576

End: 145021

Strand: Reverse

Name: ykgF [H]

Synonym: HPAG1_0136

Alternate gene names: 108562561

Gene position: 145021-143576 (Counterclockwise)

Preceding gene: 108562562

Following gene: 108562560

Centisome position: 9.08

GC content: 42.88

Gene sequence:

>1446_bases
ATGGAAAAATATCATAGCGACCAAGAATACGAAGAAATCATCACCGACCAATTAGGCGATATGCAATTAAGGGAAAATTT
GCGTTCTGCAATGGATACCTTAAGGGCTAATCGTAAGAATCTCCTTAAAAATCGTTACAGCGAGTGGGAAAATTTAAGGG
AATTAGGCAAAGAAGTCAAGCTCAAAATCTTATCCAGGCTTGATGAATATTTGGAATTGTTTGAAAAAAACGCCACTCAA
AACGGCTTTAAAATCCATTACGCTAAAGACGGCGATGAAGCCAATGAAATCATTTACAACCTCGCTAAAGAAAAGAATAT
CAATCGCATTTTAAAGCAAAAATCCATGGCGAGCGAAGAAATTGGCTTGAACCATTACTTGAAAGAAAAGGGCATTCAAG
CGCAAGAAACGGATTTGGGCGAATTGATTATCCAGCTCATTAATGAACACCCCGTGCATATTGTCGTGCCGGCTATCCAT
AAAAACCGCAAGCAAATCGGTAAGATTTTTGAAGAAAAACTCAACGCCGCTTATGAAGAAGAGCCTGAAAAGCTTAATGC
GATCGCCAGAAAATACATGCGCAAAGAATTTGAAAGCTTTAAAATGGGGATCAGTGGGGTGAATTTCGCTATCGCTAACG
AAGGAGCGATCTGGTTAGTGGAAAATGAAGGCAATGGCAGAATGAGCACCACCGCATGCGATGTGCATGTCGCTATTTGT
GGGATTGAAAAATTAGTAGAAAGCTTTGATGATGCGGCGATTTTAAACAATCTGCTCGCCCCAAGTGCTGTGGGTGTGCC
TATCACATGTTATCAAAACATTATCACAGGCCCCAGAAAAGAGGGCGATTTAGACGGCCCTAAAGAAGCCCACATCATTT
TATTAGACAACAACCGCTCTAATATTTTGGCTGATGAAAAGTATTATCGCGCTCTTTCATGCATCCGTTGCGGGACTTGT
TTGAACCACTGCCCTGTGTATGATAAAATCGGTGGGCATGCCTATCTTTCCACTTATCCTGGCCCTATAGGCGTGGTGGT
ATCCCCCCAACTCTTTGGCCTGAATAATTACGGGCATATCCCTAATTTGTGCAGTCTTTGTGGGCGTTGCACTGAAGTTT
GCCCTGTAGAAATCCCTTTAGCCGAGCTCATTAGAGATTTACGATCGGATAAAGTGGGCGAGGGCAGAGGCGTAATTAAG
GGGGCTAAAAGCACCCAACACAGCGGGATGGAAAAATTCTCTATGAAAATGTTTGCCAAAATGGCAAGCGATGGGGCTAA
GTGGCGTTTCCAATTGAAAATGGCTCAATTTTTCTCGCCTTTAGGCAAGCTTTTAGCTCCCATACTGCCTTTAGTCAAAG
AGTGGGCAAGTGTTAGGACCTTACCCAATATGGACACGAGCTTGCATGCCAAAGTCCAACACTTAGAAGGGGTGATTTAT
GAGTAA

Upstream 100 bases:

>100_bases
TGCAAAAAATGGGCTCTCTAACAAAGCCCATGCATTTTTACGACTTTTTAGCCTCAAGGCTTGGGCTTTAACATTAAAGA
ATTGTTTTAAGGAATAATCA

Downstream 100 bases:

>100_bases
AGAGCTTATTTTAAAGCGCATTAAAGAAGCCAGAGCCAAACATGCCATTCAGGGAGCAAACCCTATTTATAGAAATATCA
TTAAAGTGGAGTTTGAAGAC

Product: putative iron-sulfur protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRLDEYLELFEKNATQ
NGFKIHYAKDGDEANEIIYNLAKEKNINRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIH
KNRKQIGKIFEEKLNAAYEEEPEKLNAIARKYMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEKYYRALSCIRCGTC
LNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIK
GAKSTQHSGMEKFSMKMFAKMASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
E

Sequences:

>Translated_481_residues
MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRLDEYLELFEKNATQ
NGFKIHYAKDGDEANEIIYNLAKEKNINRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIH
KNRKQIGKIFEEKLNAAYEEEPEKLNAIARKYMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEKYYRALSCIRCGTC
LNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIK
GAKSTQHSGMEKFSMKMFAKMASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
E
>Mature_481_residues
MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSRLDEYLELFEKNATQ
NGFKIHYAKDGDEANEIIYNLAKEKNINRILKQKSMASEEIGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIH
KNRKQIGKIFEEKLNAAYEEEPEKLNAIARKYMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRSNILADEKYYRALSCIRCGTC
LNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIK
GAKSTQHSGMEKFSMKMFAKMASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
E

Specific function: Unknown

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=465, Percent_Identity=40, Blast_Score=363, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 54249; Mature: 54249

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVK
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNINRILKQKSMASEE
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEE
HCHHHHHHHCCCCCHHCCHHHHHHHHHCCCCCEEEECCHHCCHHHHHHHHHHHHHHHHHC
EPEKLNAIARKYMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCEEEEHHHHHHHHH
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRS
HHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
NILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHI
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCEECCCCCCCC
PNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAK
CHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCHHHCCHHHHHHHHHHH
MASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
HHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
E
C
>Mature Secondary Structure
MEKYHSDQEYEEIITDQLGDMQLRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVK
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKILSRLDEYLELFEKNATQNGFKIHYAKDGDEANEIIYNLAKEKNINRILKQKSMASEE
HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLNHYLKEKGIQAQETDLGELIIQLINEHPVHIVVPAIHKNRKQIGKIFEEKLNAAYEE
HCHHHHHHHCCCCCHHCCHHHHHHHHHCCCCCEEEECCHHCCHHHHHHHHHHHHHHHHHC
EPEKLNAIARKYMRKEFESFKMGISGVNFAIANEGAIWLVENEGNGRMSTTACDVHVAIC
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEECCCCCEEEEHHHHHHHHH
GIEKLVESFDDAAILNNLLAPSAVGVPITCYQNIITGPRKEGDLDGPKEAHIILLDNNRS
HHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
NILADEKYYRALSCIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHI
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCEECCCCCCCC
PNLCSLCGRCTEVCPVEIPLAELIRDLRSDKVGEGRGVIKGAKSTQHSGMEKFSMKMFAK
CHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCHHHCCHHHHHHHHHHH
MASDGAKWRFQLKMAQFFSPLGKLLAPILPLVKEWASVRTLPNMDTSLHAKVQHLEGVIY
HHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]