Click here to switch to the map view.

The map label for this gene is kdsA [H]

Identifier: 108562428

GI number: 108562428

Start: 2427

End: 3257

Strand: Reverse

Name: kdsA [H]

Synonym: HPAG1_0003

Alternate gene names: 108562428

Gene position: 3257-2427 (Counterclockwise)

Preceding gene: 108562429

Following gene: 108562427

Centisome position: 0.2

GC content: 42.96

Gene sequence:

>831_bases
ATGAAAACTTCTAAAACAAAACCCCCCAAATCCGTTTTAATCGCCGGGCCATGCGTCATTGAGAGCTTAGAAAATTTAAG
AAGTATCGCTATTAAATTGCAACCCCTAGCCAACAACGAGCGGTTGGATTTTTATTTTAAAGCGAGTTTTGATAAGGCTA
ACCGCACGAGTTTAGAGAGTTACAGAGGGCCTGGTTTAGAAAAAGGCCTAGAAATGTTACAAATTATCAAAGAGGAATTT
GGCTATAAAATTTTAACCGATGTGCATGAGAGCTATCAAGCAAGCGTGGCGGCTAAAGTAGCGGATATTTTACAAATCCC
GGCGTTTTTGTGCCGCCAAACGGATCTGATTGTAGAAGTGAGCCAGACTAACGCTATTATCAACATCAAAAAAGGGCAAT
TCATGAACCCAAAAGACATGCAATATTCCGTTCTAAAAGCCCTTAAAACAAGGGATAGTAGCATTCAAAGCCCCACTTAT
GAAACGGCGTTAAAAAATGGCGTGTGGTTGTGTGAAAGGGGGAGCAGCTTTGGGTATGGGAATTTAGTGGTGGATATGCG
CTCTTTAACAATCATGCGAGAGTTTGCCCCTGTGATTTTTGACGCTACCCATAGCGTGCAAATGCCAGGGGGAGCGAACG
GGAAAAGTTCAGGCGATAGTTCTTTTGCCCCTATTTTAGCCAGAGCGGCGGCGGCGGTAGGGATTGATGGGTTATTCGCT
GAAACGCATGTTGATCCTAAAAACGCTCTAAGCGATGGGGCGAACATGCTAAAACCTGATGAGCTAGAACGCTTAGTAAC
CGACATGTTAAAAATCCAAAATTTATTTTAA

Upstream 100 bases:

>100_bases
GGTTGGCACTATATCATAGAAACAGGCAGGATTTATAATTATAATTTTGAAAGCCATTTTTTTGAGCCGATTGAAGAAAC
CATTAAACAAAGGAAAAGTC

Downstream 100 bases:

>100_bases
AGGAATTTCATGCAAATCATAGAAGGGAAATTGCAATTGCAAGGGAATGAAAGAGTCGCTATTTTAACATCGCGCTTCAA
CCATATCATCACAGACAGAT

Product: 2-dehydro-3-deoxyphosphooctonate aldolase

Products: NA

Alternate protein names: 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase; KDO-8-phosphate synthase; KDO 8-P synthase; KDOPS; Phospho-2-dehydro-3-deoxyoctonate aldolase [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MKTSKTKPPKSVLIAGPCVIESLENLRSIAIKLQPLANNERLDFYFKASFDKANRTSLESYRGPGLEKGLEMLQIIKEEF
GYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIINIKKGQFMNPKDMQYSVLKALKTRDSSIQSPTY
ETALKNGVWLCERGSSFGYGNLVVDMRSLTIMREFAPVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFA
ETHVDPKNALSDGANMLKPDELERLVTDMLKIQNLF

Sequences:

>Translated_276_residues
MKTSKTKPPKSVLIAGPCVIESLENLRSIAIKLQPLANNERLDFYFKASFDKANRTSLESYRGPGLEKGLEMLQIIKEEF
GYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIINIKKGQFMNPKDMQYSVLKALKTRDSSIQSPTY
ETALKNGVWLCERGSSFGYGNLVVDMRSLTIMREFAPVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFA
ETHVDPKNALSDGANMLKPDELERLVTDMLKIQNLF
>Mature_276_residues
MKTSKTKPPKSVLIAGPCVIESLENLRSIAIKLQPLANNERLDFYFKASFDKANRTSLESYRGPGLEKGLEMLQIIKEEF
GYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIINIKKGQFMNPKDMQYSVLKALKTRDSSIQSPTY
ETALKNGVWLCERGSSFGYGNLVVDMRSLTIMREFAPVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFA
ETHVDPKNALSDGANMLKPDELERLVTDMLKIQNLF

Specific function: Synthesis Of Kdo 8-P Which Is Required For Lipid A Maturation And Cellular Growth. [C]

COG id: COG2877

COG function: function code M; 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdsA family [H]

Homologues:

Organism=Escherichia coli, GI1787466, Length=267, Percent_Identity=42.6966292134831, Blast_Score=204, Evalue=5e-54,

Paralogues:

None

Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006218
- InterPro:   IPR006269 [H]

Pfam domain/function: PF00793 DAHP_synth_1 [H]

EC number: =2.5.1.55 [H]

Molecular weight: Translated: 30340; Mature: 30340

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSKTKPPKSVLIAGPCVIESLENLRSIAIKLQPLANNERLDFYFKASFDKANRTSLES
CCCCCCCCCCCEEEECHHHHHHHHHHHHEEEEEEECCCCCCEEEEEEECCCCCCHHHHHH
YRGPGLEKGLEMLQIIKEEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEV
HCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
SQTNAIINIKKGQFMNPKDMQYSVLKALKTRDSSIQSPTYETALKNGVWLCERGSSFGYG
ECCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCC
NLVVDMRSLTIMREFAPVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFA
CEEEHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
ETHVDPKNALSDGANMLKPDELERLVTDMLKIQNLF
HCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTSKTKPPKSVLIAGPCVIESLENLRSIAIKLQPLANNERLDFYFKASFDKANRTSLES
CCCCCCCCCCCEEEECHHHHHHHHHHHHEEEEEEECCCCCCEEEEEEECCCCCCHHHHHH
YRGPGLEKGLEMLQIIKEEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEV
HCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
SQTNAIINIKKGQFMNPKDMQYSVLKALKTRDSSIQSPTYETALKNGVWLCERGSSFGYG
ECCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCC
NLVVDMRSLTIMREFAPVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFA
CEEEHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
ETHVDPKNALSDGANMLKPDELERLVTDMLKIQNLF
HCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA