| Definition | Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008060 |
| Length | 3,294,563 |
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The map label for this gene is cmcT [H]
Identifier: 107021920
GI number: 107021920
Start: 403607
End: 405046
Strand: Reverse
Name: cmcT [H]
Synonym: Bcen_0362
Alternate gene names: 107021920
Gene position: 405046-403607 (Counterclockwise)
Preceding gene: 107021921
Following gene: 107021919
Centisome position: 12.29
GC content: 70.83
Gene sequence:
>1440_bases ATGACCCACGGGATTCACGGCGAGAAGCGCTGGTACGCGCTGATCGTGCTCTGTCTCGGCGTGCTGATGATCGTGCTCGA CAGCACGATCGTGAACGTTGCGCTGCCGTCGATCAGTACCGACCTCCACTTCACCGAAACGGCCCTCGTCTGGGTCGTCA ACGCGTACCTGCTGACGTTCGGCGGCTGCCTGCTGCTCGGCGGCCGGCTCGGCGACCTGTACGGCCAGCGGCGCATGTTC CTCGCGGGCCTCGTCGTGTTCACGCTCGCGTCGCTCGCCTGCGGCCTCGCGCAATCGCAGGCGATGCTGATCGCCGCGCG CGCGGTGCAGGGACTCGGCGGCGCGGTCGTGTCGGCCGTCTCGCTGTCGCTGATCATGAATCTCTTCACGGAACCCGGCG AACGCGCGCGTGCGATGGGCGTCTACGGCTTCGTCTGCGCGGGCGGCGGCAGCATCGGCGTGCTGCTCGGCGGGCTGCTG ACGAGCTCGCTGTCGTGGCACTGGATCTTCCTCGTCAACCTGCCGATCGGCGTCGCCGTCTATGCGATGTGCGTCGCGTT GCTGCCGCGCGTGCGTGCACCGGCCGGCACCGCGCGGCTCGACGTCGCCGGCGCGATCACGGTGACCGCATCGCTGATGC TGGCCGTCTACGGGATCGTCGGCGGCAACGAGGCCGGCTGGCTGTCGACGCAGACCGTCGCACTGATCGGCGCGGCCGTC GTGCTGCTCGCGCTGTTCATCGCGATCGAGTCGCGTGCCGCGCATCCGCTGATGCCGCTCACGCTGTTCGCCGCGCGCAA CGTGGCGCTCGCGAATGCGATCGCCGTGCTGTGGGCAGCCGCGATGTTCGCGTGGTTCTTCCTGTCCGCGCTGTACATGC AGCGCGTGCTCGGCTATGGGCCGCTGCAGGTCGGCCTCGCGTTCCTGCCGGCGAATTTGATCATGGCCGCGTTCTCGCTC GGGCTGTCGGCGCGCATCGTGATGCGTTTCGGCATCCGCGGCCCGATCGCGGCCGGCCTGCTGCTCGCGGCGTGCGGCCT CGCGCTGTTCTCGCGCGCACCGGTCGACGGCGGTTTCGTGTGGCACGTGCTGCCCGGCATGACGCTGCTCGGCATCGGCG CGGGCGTCGCGTTCAACCCGGTGCTGCTCGCCGCGATGAACGACGTCGACCCGGCCGATTCCGGGCTCGCGTCAGGCATC GTCAACACGTCGTTCATGATGGGCGGCGCGCTCGGGCTCGCGATCCTCGCGAGTCTCGCCGGCGCCCGCACCGACGCGCT CGCGGCGACGCAAGCCGCGCCGCTCGACGCGCTGAACGGCGGCTACCACGCGGCCTTCGCGTTCGGCGCGGCGTTTGCCG CCGTGGCCGCGCTGACCGGTTTGGCGCTGCGCATCCGGGCGCCACGCGCGGTCGAAGGCGCCGGCCCCGCGATGCACTGA
Upstream 100 bases:
>100_bases CGCGCCACTACGCGACGCTCCTGCCACAAACCGGCAGGAAGCCCGCGCCGGCGACCTCTACAATGCATCCTTCAAATAAC GATCAGAAGGCTGCAGGCCC
Downstream 100 bases:
>100_bases CCGTCGACGGGGAAACCGGGGAACCGGGGAACCGGGGAACCGGGGAACCGGCATCGGAGCAGGGCACGCGTTGTCGCGCC TCTTTTTTATGCGCGTCGGA
Product: EmrB/QacA family drug resistance transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 479; Mature: 478
Protein sequence:
>479_residues MTHGIHGEKRWYALIVLCLGVLMIVLDSTIVNVALPSISTDLHFTETALVWVVNAYLLTFGGCLLLGGRLGDLYGQRRMF LAGLVVFTLASLACGLAQSQAMLIAARAVQGLGGAVVSAVSLSLIMNLFTEPGERARAMGVYGFVCAGGGSIGVLLGGLL TSSLSWHWIFLVNLPIGVAVYAMCVALLPRVRAPAGTARLDVAGAITVTASLMLAVYGIVGGNEAGWLSTQTVALIGAAV VLLALFIAIESRAAHPLMPLTLFAARNVALANAIAVLWAAAMFAWFFLSALYMQRVLGYGPLQVGLAFLPANLIMAAFSL GLSARIVMRFGIRGPIAAGLLLAACGLALFSRAPVDGGFVWHVLPGMTLLGIGAGVAFNPVLLAAMNDVDPADSGLASGI VNTSFMMGGALGLAILASLAGARTDALAATQAAPLDALNGGYHAAFAFGAAFAAVAALTGLALRIRAPRAVEGAGPAMH
Sequences:
>Translated_479_residues MTHGIHGEKRWYALIVLCLGVLMIVLDSTIVNVALPSISTDLHFTETALVWVVNAYLLTFGGCLLLGGRLGDLYGQRRMF LAGLVVFTLASLACGLAQSQAMLIAARAVQGLGGAVVSAVSLSLIMNLFTEPGERARAMGVYGFVCAGGGSIGVLLGGLL TSSLSWHWIFLVNLPIGVAVYAMCVALLPRVRAPAGTARLDVAGAITVTASLMLAVYGIVGGNEAGWLSTQTVALIGAAV VLLALFIAIESRAAHPLMPLTLFAARNVALANAIAVLWAAAMFAWFFLSALYMQRVLGYGPLQVGLAFLPANLIMAAFSL GLSARIVMRFGIRGPIAAGLLLAACGLALFSRAPVDGGFVWHVLPGMTLLGIGAGVAFNPVLLAAMNDVDPADSGLASGI VNTSFMMGGALGLAILASLAGARTDALAATQAAPLDALNGGYHAAFAFGAAFAAVAALTGLALRIRAPRAVEGAGPAMH >Mature_478_residues THGIHGEKRWYALIVLCLGVLMIVLDSTIVNVALPSISTDLHFTETALVWVVNAYLLTFGGCLLLGGRLGDLYGQRRMFL AGLVVFTLASLACGLAQSQAMLIAARAVQGLGGAVVSAVSLSLIMNLFTEPGERARAMGVYGFVCAGGGSIGVLLGGLLT SSLSWHWIFLVNLPIGVAVYAMCVALLPRVRAPAGTARLDVAGAITVTASLMLAVYGIVGGNEAGWLSTQTVALIGAAVV LLALFIAIESRAAHPLMPLTLFAARNVALANAIAVLWAAAMFAWFFLSALYMQRVLGYGPLQVGLAFLPANLIMAAFSLG LSARIVMRFGIRGPIAAGLLLAACGLALFSRAPVDGGFVWHVLPGMTLLGIGAGVAFNPVLLAAMNDVDPADSGLASGIV NTSFMMGGALGLAILASLAGARTDALAATQAAPLDALNGGYHAAFAFGAAFAAVAALTGLALRIRAPRAVEGAGPAMH
Specific function: Involved in cephamycin export [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=426, Percent_Identity=32.3943661971831, Blast_Score=171, Evalue=6e-44, Organism=Escherichia coli, GI1789042, Length=450, Percent_Identity=26.6666666666667, Blast_Score=132, Evalue=4e-32, Organism=Escherichia coli, GI1790195, Length=420, Percent_Identity=30, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI1788710, Length=456, Percent_Identity=26.0964912280702, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1788392, Length=426, Percent_Identity=29.81220657277, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1790146, Length=169, Percent_Identity=25.4437869822485, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI87082320, Length=201, Percent_Identity=27.363184079602, Blast_Score=63, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324954, Length=396, Percent_Identity=26.7676767676768, Blast_Score=117, Evalue=3e-27, Organism=Saccharomyces cerevisiae, GI6319770, Length=294, Percent_Identity=26.8707482993197, Blast_Score=77, Evalue=8e-15, Organism=Saccharomyces cerevisiae, GI6325455, Length=457, Percent_Identity=24.507658643326, Blast_Score=73, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6322958, Length=386, Percent_Identity=24.0932642487047, Blast_Score=73, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6321663, Length=127, Percent_Identity=34.6456692913386, Blast_Score=71, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6323520, Length=269, Percent_Identity=26.7657992565056, Blast_Score=70, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6323735, Length=309, Percent_Identity=24.2718446601942, Blast_Score=67, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 49024; Mature: 48893
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHGIHGEKRWYALIVLCLGVLMIVLDSTIVNVALPSISTDLHFTETALVWVVNAYLLTF CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH GGCLLLGGRLGDLYGQRRMFLAGLVVFTLASLACGLAQSQAMLIAARAVQGLGGAVVSAV CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH SLSLIMNLFTEPGERARAMGVYGFVCAGGGSIGVLLGGLLTSSLSWHWIFLVNLPIGVAV HHHHHHHHHCCCCHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHH YAMCVALLPRVRAPAGTARLDVAGAITVTASLMLAVYGIVGGNEAGWLSTQTVALIGAAV HHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH VLLALFIAIESRAAHPLMPLTLFAARNVALANAIAVLWAAAMFAWFFLSALYMQRVLGYG HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PLQVGLAFLPANLIMAAFSLGLSARIVMRFGIRGPIAAGLLLAACGLALFSRAPVDGGFV HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH WHVLPGMTLLGIGAGVAFNPVLLAAMNDVDPADSGLASGIVNTSFMMGGALGLAILASLA HHHHCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GARTDALAATQAAPLDALNGGYHAAFAFGAAFAAVAALTGLALRIRAPRAVEGAGPAMH CCCHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCC >Mature Secondary Structure THGIHGEKRWYALIVLCLGVLMIVLDSTIVNVALPSISTDLHFTETALVWVVNAYLLTF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH GGCLLLGGRLGDLYGQRRMFLAGLVVFTLASLACGLAQSQAMLIAARAVQGLGGAVVSAV CHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH SLSLIMNLFTEPGERARAMGVYGFVCAGGGSIGVLLGGLLTSSLSWHWIFLVNLPIGVAV HHHHHHHHHCCCCHHHHHHCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHH YAMCVALLPRVRAPAGTARLDVAGAITVTASLMLAVYGIVGGNEAGWLSTQTVALIGAAV HHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH VLLALFIAIESRAAHPLMPLTLFAARNVALANAIAVLWAAAMFAWFFLSALYMQRVLGYG HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PLQVGLAFLPANLIMAAFSLGLSARIVMRFGIRGPIAAGLLLAACGLALFSRAPVDGGFV HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH WHVLPGMTLLGIGAGVAFNPVLLAAMNDVDPADSGLASGIVNTSFMMGGALGLAILASLA HHHHCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GARTDALAATQAAPLDALNGGYHAAFAFGAAFAAVAALTGLALRIRAPRAVEGAGPAMH CCCHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8440253 [H]