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The map label for this gene is secD [H]

Identifier: 107021796

GI number: 107021796

Start: 251224

End: 253245

Strand: Reverse

Name: secD [H]

Synonym: Bcen_0236

Alternate gene names: 107021796

Gene position: 253245-251224 (Counterclockwise)

Preceding gene: 107021797

Following gene: 107021795

Centisome position: 7.69

GC content: 67.95

Gene sequence:

>2022_bases
ATGAATCGTTATCCACTCTGGAAATATGTCGTGATGGTCGTGGCGCTCGCCATCGGCCTTCTGTACACATTGCCCAACTT
CTTCGGCGAAGCGCCGGCGGTGCAGGTGTCGAGCGGCAAGGCCACGGTCAAGCTCGACTCGACCACGCTGACCCAGGTCG
AATCGGCACTCGCGTCCGCGCAGATCAAGCCGGACGACGTCACCTTCGAGAACACGGCGACCAGCGCGAACATCCGCGTG
CGCCTGAAGGACACCGATACGCAGCTGCGCGTCAAGGACCTGCTGCAGAAGTCGCTGAATGCCGACCCGAACGATCCGCA
GTACGTCGTCGCACTGAACCTGCAGAGCGCGTCGCCGCGCTGGCTGACCGCCCTGCACGCGCTGCCGATGTATCTCGGCC
TCGACCTGCGCGGCGGCGTGCACTTCCTGCTCCAGGTCGACATGACGGGCGCGCTCACGAAGAAGCTCGACTCCGACGCG
TCCGACGCGCGCTCGCTGCTGCGCGACAAGAACATCCGCGACGGCGGCGTGAGCCGCGTCGAGCAGTCCGTGGTCGTCAA
CTTCAGCGATGCGCAGACGGCGGAAGACGCCCGCAAGGTGCTCGCCGCGTCGATCACCGAGCTGCAATGGGCGACCCAGC
CCGGCGGCGGCGGCACGCAAGTCGTCGGCACCTTCACGCCGGCCGTGCAGAAGTCGGTCGAGGACGCCGCGCTCAAGCAG
AACCTGACGACGCTCCACAACCGCGTGAACGAGCTCGGCGTGTCCGAGCCGATCCTGCAGCAGCAAGGCAGCGACCGCAT
CGTCGTCGAACTGCCGGGCGTGCAGGACACCGCGAAGGCGAAGGACATCATCGGCCGCACCGCGACCCTCGAGGCGCGCC
TGGCCGACCCGATCAACACGCACCCGAACCCGAACGACCCCGTGCCGCCGGGCGAGGAGCTGTTCACGCAAGGCAACCAG
GCGCCCGTGCTGCTGAAGAAGGACGTGATCTTCACCGGCGACCGCATCATCGACGCATCGGCCGGCTTCGACGAACACCA
GCGTCCGTCGGTCAACATCCGCCTCGACTCGGCGGGCGGCCGCGCGGTGCGCACGGTGTCGCGCGACAACATCGGCAAGC
CGATGGCGATGGTGCTGTTCGAGAAGGGCAAGGGCGAAGTGCTGACGGTCGCGACGATCCAGTCCGAGCTCGGCGACCGC
TTCCAGATCACGGGCCAGCCGACGCCGCAGGCCGCGGCCGACCTCGCGCTGCTGCTGCGCGCCGGCTCGCTCGCGGCGCC
GATGGACATCATCGAGGAACGCACGATCGGCCCGAGCCTCGGCGCCGACAACATCAAGATGGGCGTGCACTCGGTGATCT
GGGGCTTCTGCGCGATCGCCGTGTTCATGATCGCGTACTACATGCTGTTCGGCGTGGTGTCGGTGATCGGGCTGTCGGTG
AACCTGCTGCTGCTCGTCGCCGTGCTGTCGCTGATGCAGGCGACGCTGACGCTGCCCGGTATCGCGGCCATCGCGCTCGC
GCTCGGTATGGCGATCGACTCGAACGTGCTGATCAACGAGCGCGTGCGCGAAGAACTGCGCGCCGGCCAGCCGCCGCAGC
TCGCGATCCAGGCCGGCTACGCGCATGCGTGGGCGACGATTCTCGACTCGAACGTCACGACGCTGATCGCCGGTCTCGCG
CTGCTTGCGTTCGGTTCGGGCCCGGTTCGCGCGTTCGCGATCGTGCACTGCCTCGGCATCCTGACGTCGATGTTCTCCGC
GGTGTTCTTCTCGCGCGGGCTCGTCAACCTCTGGTACGGCGGCCGCAAGAAGCTGAAGTCGCTCGCGATCGGCCAGGTGT
GGAAGCCGGAAGGCGCCGCTGCCGCCGCGTCGTTCACCGACGAGGACGAATCGACCGACACCGCGCGCGCCGCGAAGCTC
GCCGCCCCGGCGAAGGGCAACGCGCCGCGCGCCGGCAAGCCGCAGCTGCGCAACCGCGCGCAGCAAGGCGTGTCGCCGAA
GAAACCGGGCTCGACCCAATAA

Upstream 100 bases:

>100_bases
CACCGAGCGTCCGGCTCCCCGCGCCGTGCCCGCCTGAGAGAGCGGGCCGCCGCGGCGCCGGACGCGACGCTTTCACGCCA
ACCACCCGTTCGGCCCCCTC

Downstream 100 bases:

>100_bases
GGCCCCGGAGACGAAGCCATGGAATTTTTCCGCATCCGTAAAGACATTCCGTTCATGCGGCACGCGCTGGTGTTCAACGT
GATCTCGCTGGTCACGTTCC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 673; Mature: 673

Protein sequence:

>673_residues
MNRYPLWKYVVMVVALAIGLLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASAQIKPDDVTFENTATSANIRV
RLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARSLLRDKNIRDGGVSRVEQSVVVNFSDAQTAEDARKVLAASITELQWATQPGGGGTQVVGTFTPAVQKSVEDAALKQ
NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQ
APVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVVSVIGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLKSLAIGQVWKPEGAAAAASFTDEDESTDTARAAKL
AAPAKGNAPRAGKPQLRNRAQQGVSPKKPGSTQ

Sequences:

>Translated_673_residues
MNRYPLWKYVVMVVALAIGLLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASAQIKPDDVTFENTATSANIRV
RLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARSLLRDKNIRDGGVSRVEQSVVVNFSDAQTAEDARKVLAASITELQWATQPGGGGTQVVGTFTPAVQKSVEDAALKQ
NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQ
APVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVVSVIGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLKSLAIGQVWKPEGAAAAASFTDEDESTDTARAAKL
AAPAKGNAPRAGKPQLRNRAQQGVSPKKPGSTQ
>Mature_673_residues
MNRYPLWKYVVMVVALAIGLLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASAQIKPDDVTFENTATSANIRV
RLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARSLLRDKNIRDGGVSRVEQSVVVNFSDAQTAEDARKVLAASITELQWATQPGGGGTQVVGTFTPAVQKSVEDAALKQ
NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQ
APVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVVSVIGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLKSLAIGQVWKPEGAAAAASFTDEDESTDTARAAKL
AAPAKGNAPRAGKPQLRNRAQQGVSPKKPGSTQ

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=628, Percent_Identity=45.2229299363057, Blast_Score=514, Evalue=1e-147,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 71700; Mature: 71700

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPLWKYVVMVVALAIGLLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCHHHHHHHHHHHHC
QIKPDDVTFENTATSANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR
CCCCCCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARSLLRDKNIRDGGVSRV
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHH
EQSVVVNFSDAQTAEDARKVLAASITELQWATQPGGGGTQVVGTFTPAVQKSVEDAALKQ
HHHHEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT
HHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC
HPNPNDPVPPGEELFTQGNQAPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGG
CCCCCCCCCCCHHHHCCCCCCCEEEECCEEEECCEEEECCCCCCCCCCCEEEEEEECCCC
RAVRTVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR
CEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH
AGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVVSVIGLSV
CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGY
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCH
AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYG
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GRKKLKSLAIGQVWKPEGAAAAASFTDEDESTDTARAAKLAAPAKGNAPRAGKPQLRNRA
CHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
QQGVSPKKPGSTQ
HHCCCCCCCCCCC
>Mature Secondary Structure
MNRYPLWKYVVMVVALAIGLLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCHHHHHHHHHHHHC
QIKPDDVTFENTATSANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR
CCCCCCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARSLLRDKNIRDGGVSRV
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHH
EQSVVVNFSDAQTAEDARKVLAASITELQWATQPGGGGTQVVGTFTPAVQKSVEDAALKQ
HHHHEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT
HHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC
HPNPNDPVPPGEELFTQGNQAPVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGG
CCCCCCCCCCCHHHHCCCCCCCEEEECCEEEECCEEEECCCCCCCCCCCEEEEEEECCCC
RAVRTVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR
CEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH
AGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVVSVIGLSV
CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGY
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCEEEECCH
AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYG
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GRKKLKSLAIGQVWKPEGAAAAASFTDEDESTDTARAAKLAAPAKGNAPRAGKPQLRNRA
CHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
QQGVSPKKPGSTQ
HHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]