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The map label for this gene is rpoE [H]

Identifier: 107021621

GI number: 107021621

Start: 54503

End: 55024

Strand: Reverse

Name: rpoE [H]

Synonym: Bcen_0060

Alternate gene names: 107021621

Gene position: 55024-54503 (Counterclockwise)

Preceding gene: 107021627

Following gene: 107021620

Centisome position: 1.67

GC content: 67.43

Gene sequence:

>522_bases
ATGCCCTCCACCGCCCTCGACGACGAAGCATTGCGCGAACTCATCCCCAGGCTGCGACGCTTCGCACTCTGGCTGGCGCG
CGACGTCCACGCGGCCGACGATCTCGTCCAGTCGACGCTCGAGCGCGCACTGTCGCGCTGGACGAGCCGTCGCGACGACG
CATCGCTGCGCAGCTGGCTCTTCACCATCCTGTACCGGCAATTTCTCGACGGCAAACGCAGCGCGAAGCGCTACAGCTGG
CTGCTCGGCCGCATTCGCGACGACGACGAAGCGCACTGGCCGTCCGCCGAACGCGAATTCGCGGCGCGCGCGACGCTCGA
AGCGTTCGGCCGGCTCTCGGACGAACAGCGAAGCCTGCTGCTGCTCGTCGCGGTCGAAGGCTTCACCTATCAGGAAGTCG
CCGACCTGCTCGAGGTGCCGATCGGCACGGTGATGTCGCGGCTCTCCCGCGCGCGCCAGGCGCTGCGCCAGCTCAGCGAC
GGCGAACTTCCTGCTCCTTCCTTGCGGCTGATGAAGAAATGA

Upstream 100 bases:

>100_bases
CTTTATTCCACGAACAGTTTTTTCGTATGCTGGAGGGAATAACCGATGCCGGCCGGCGTCCTACGCGGCATCTACGACCC
TTTCGGCAACCGGCCCGGCC

Downstream 100 bases:

>100_bases
ACACCCCTCCGAACGAACATGACCTTCAGGCCTATGTCGACGGCCAACTCGACGACGATGCGCGCGCAGCGGTCGAGCGT
TATCTCGCGCTGCATCCGGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MPSTALDDEALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWTSRRDDASLRSWLFTILYRQFLDGKRSAKRYSW
LLGRIRDDDEAHWPSAEREFAARATLEAFGRLSDEQRSLLLLVAVEGFTYQEVADLLEVPIGTVMSRLSRARQALRQLSD
GELPAPSLRLMKK

Sequences:

>Translated_173_residues
MPSTALDDEALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWTSRRDDASLRSWLFTILYRQFLDGKRSAKRYSW
LLGRIRDDDEAHWPSAEREFAARATLEAFGRLSDEQRSLLLLVAVEGFTYQEVADLLEVPIGTVMSRLSRARQALRQLSD
GELPAPSLRLMKK
>Mature_172_residues
PSTALDDEALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWTSRRDDASLRSWLFTILYRQFLDGKRSAKRYSWL
LGRIRDDDEAHWPSAEREFAARATLEAFGRLSDEQRSLLLLVAVEGFTYQEVADLLEVPIGTVMSRLSRARQALRQLSDG
ELPAPSLRLMKK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19969; Mature: 19838

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSTALDDEALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWTSRRDDASLRSWL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FTILYRQFLDGKRSAKRYSWLLGRIRDDDEAHWPSAEREFAARATLEAFGRLSDEQRSLL
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEE
LLVAVEGFTYQEVADLLEVPIGTVMSRLSRARQALRQLSDGELPAPSLRLMKK
HEEHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC
>Mature Secondary Structure 
PSTALDDEALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWTSRRDDASLRSWL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FTILYRQFLDGKRSAKRYSWLLGRIRDDDEAHWPSAEREFAARATLEAFGRLSDEQRSLL
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEE
LLVAVEGFTYQEVADLLEVPIGTVMSRLSRARQALRQLSDGELPAPSLRLMKK
HEEHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]