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The map label for this gene is ywbI [H]

Identifier: 107021588

GI number: 107021588

Start: 25334

End: 26260

Strand: Reverse

Name: ywbI [H]

Synonym: Bcen_0026

Alternate gene names: 107021588

Gene position: 26260-25334 (Counterclockwise)

Preceding gene: 107021606

Following gene: 107021583

Centisome position: 0.8

GC content: 70.33

Gene sequence:

>927_bases
ATGGAATTGCGCGCGTTGCGGTACTTCGTCGAGGTGGTTCGCCAGCAGAGCTTCACCGCGGCGGCCGACCGGCTGTTCGT
CACGCAGCCGACCATCAGCAAGATGGTGAAGGCGCTGGAGGACGAGATCGGTTCGCCGCTGCTGCTGCGCGACGGCCGGC
AGATGGTGCTGACCGACGCCGGGCGGATCGTGTTCCAGCGCGGCCAGGACGTGCTCGCCGCGCAGGCGCAGCTGCAGTCG
GAGCTGAACGATCTCGGCACGCTCGGGCGCGGCGAGCTGACGATCGGCATCCCGCCGCTCGGCGGTTCGCTGTTCACGCC
GATCATCGCCGCGTACAAGCAGCGCTACCCGAACATCGAGCTGAAGCTGTTCGAGCAGGGCGCGCGGATGATCGAGGCCG
CGCTGATGTCGGGCGAGCTGGAACTCGGCGGCCTGCTGGAGCCGGTCGATCCCGGCACGTTCGAGCGGCTGCCGATGGTG
CGCGCGCCGCTGTGGCTCGTCGCGCCGCGCGAGTCGCGCTGGGAGGACCACGCGGCCGTGCCGCTCGCGGATCTCGCGCG
CGAATCGTTCGTGTTCTATGCGGAAAGCCTCGCGCTGCACGATGCGGTGCTCGATGCGTGCCGCCAGGCCGGCTTCATGC
CGTCGATCGTGAGCCGCAGCGGCCACTGGGATTTCATGGCCGCGCTCGTGCATGCGGGCGTCGGCATCGCGCTGCTGCCC
GAGCCGTATTGCCGGCGGCTCGACGCGAGCCAGTTCACGTGCCGGCCGATCGTCGAGCCGGAAATCACGTGGGCGATCGC
GCTCGGCTGGCTGAAGAAGGGCTACCTGTCGCATGCGGCGCGCGCATGGCTCGACGTCGCGCGGGCGACGCTGCCGCTCG
CGCCGGCCGACGATCTGGCGTTCGGGGGATTGCGGGCGCGGGAGTGA

Upstream 100 bases:

>100_bases
AGGGTTTCCCCTAACCATAAATAAAATGACTTCTCTCTATTCTTGTCATTCCAATTCGGAATTCGCTTGCATTCAGCCGC
ACCAATCTGGGGAGTGATCG

Downstream 100 bases:

>100_bases
CGGTTGCGCCCCCGCTCGGCGTGATCAGACGTGCCGAATCGGGCCCGGATACCGGGCAACCGTATGGTCGTGCGTGAGAA
ACGTAACGCCTTCTGCAATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MELRALRYFVEVVRQQSFTAAADRLFVTQPTISKMVKALEDEIGSPLLLRDGRQMVLTDAGRIVFQRGQDVLAAQAQLQS
ELNDLGTLGRGELTIGIPPLGGSLFTPIIAAYKQRYPNIELKLFEQGARMIEAALMSGELELGGLLEPVDPGTFERLPMV
RAPLWLVAPRESRWEDHAAVPLADLARESFVFYAESLALHDAVLDACRQAGFMPSIVSRSGHWDFMAALVHAGVGIALLP
EPYCRRLDASQFTCRPIVEPEITWAIALGWLKKGYLSHAARAWLDVARATLPLAPADDLAFGGLRARE

Sequences:

>Translated_308_residues
MELRALRYFVEVVRQQSFTAAADRLFVTQPTISKMVKALEDEIGSPLLLRDGRQMVLTDAGRIVFQRGQDVLAAQAQLQS
ELNDLGTLGRGELTIGIPPLGGSLFTPIIAAYKQRYPNIELKLFEQGARMIEAALMSGELELGGLLEPVDPGTFERLPMV
RAPLWLVAPRESRWEDHAAVPLADLARESFVFYAESLALHDAVLDACRQAGFMPSIVSRSGHWDFMAALVHAGVGIALLP
EPYCRRLDASQFTCRPIVEPEITWAIALGWLKKGYLSHAARAWLDVARATLPLAPADDLAFGGLRARE
>Mature_308_residues
MELRALRYFVEVVRQQSFTAAADRLFVTQPTISKMVKALEDEIGSPLLLRDGRQMVLTDAGRIVFQRGQDVLAAQAQLQS
ELNDLGTLGRGELTIGIPPLGGSLFTPIIAAYKQRYPNIELKLFEQGARMIEAALMSGELELGGLLEPVDPGTFERLPMV
RAPLWLVAPRESRWEDHAAVPLADLARESFVFYAESLALHDAVLDACRQAGFMPSIVSRSGHWDFMAALVHAGVGIALLP
EPYCRRLDASQFTCRPIVEPEITWAIALGWLKKGYLSHAARAWLDVARATLPLAPADDLAFGGLRARE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=287, Percent_Identity=30.6620209059233, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1790399, Length=296, Percent_Identity=31.0810810810811, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI157672245, Length=285, Percent_Identity=29.8245614035088, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1788887, Length=297, Percent_Identity=29.2929292929293, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI2367136, Length=248, Percent_Identity=27.4193548387097, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788748, Length=293, Percent_Identity=29.3515358361775, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=25.3012048192771, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693105, Length=284, Percent_Identity=24.2957746478873, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787530, Length=245, Percent_Identity=25.7142857142857, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789506, Length=306, Percent_Identity=21.5686274509804, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI145693193, Length=123, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786401, Length=142, Percent_Identity=33.0985915492958, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=23.3606557377049, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790208, Length=244, Percent_Identity=26.6393442622951, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789173, Length=122, Percent_Identity=31.1475409836066, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=148, Percent_Identity=30.4054054054054, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787806, Length=246, Percent_Identity=23.9837398373984, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33930; Mature: 33930

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRALRYFVEVVRQQSFTAAADRLFVTQPTISKMVKALEDEIGSPLLLRDGRQMVLTDA
CCHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHCCCEEEECCCEEEEECC
GRIVFQRGQDVLAAQAQLQSELNDLGTLGRGELTIGIPPLGGSLFTPIIAAYKQRYPNIE
CHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCE
LKLFEQGARMIEAALMSGELELGGLLEPVDPGTFERLPMVRAPLWLVAPRESRWEDHAAV
EEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHCCEEEECCCCCCCCCCCCC
PLADLARESFVFYAESLALHDAVLDACRQAGFMPSIVSRSGHWDFMAALVHAGVGIALLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHCCCCEEECC
EPYCRRLDASQFTCRPIVEPEITWAIALGWLKKGYLSHAARAWLDVARATLPLAPADDLA
CHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
FGGLRARE
CCCCCCCC
>Mature Secondary Structure
MELRALRYFVEVVRQQSFTAAADRLFVTQPTISKMVKALEDEIGSPLLLRDGRQMVLTDA
CCHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHCCCEEEECCCEEEEECC
GRIVFQRGQDVLAAQAQLQSELNDLGTLGRGELTIGIPPLGGSLFTPIIAAYKQRYPNIE
CHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCE
LKLFEQGARMIEAALMSGELELGGLLEPVDPGTFERLPMVRAPLWLVAPRESRWEDHAAV
EEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCHHHCCEEEECCCCCCCCCCCCC
PLADLARESFVFYAESLALHDAVLDACRQAGFMPSIVSRSGHWDFMAALVHAGVGIALLP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHCCCCEEECC
EPYCRRLDASQFTCRPIVEPEITWAIALGWLKKGYLSHAARAWLDVARATLPLAPADDLA
CHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
FGGLRARE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]