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The map label for this gene is yrbE [C]

Identifier: 104779408

GI number: 104779408

Start: 93420

End: 94544

Strand: Reverse

Name: yrbE [C]

Synonym: PSEEN0098

Alternate gene names: 104779408

Gene position: 94544-93420 (Counterclockwise)

Preceding gene: 104779409

Following gene: 104779407

Centisome position: 1.61

GC content: 67.02

Gene sequence:

>1125_bases
ATGACCGCCCCGAGCGCAATCCTGGACACCCAGCAGCAGCCCACCCGCCTGCACATTGCCGGCGACTGGACCCTGGCCCA
CTACGCCAGCCTCAAGCGCGAATGCGAGCGCCTGGGCAGCCAGTACGGCGATGACACCCAGGTCGACCTCAGCCAGCTGG
GCCGACTCGACACCGCAGGCGCCTCGCTGCTAGCTGAATTGCTGGGCTCCGAACGCCTGTCACACTGCACTGACGACCTC
CCCGACGCCAGCCGCGCCTTGCTCAAGAATGTCTACTGCTCGGTGCAGGACTACTGCATCCCGGTCAAACAGCCCGAGCA
GCCGGTGCTGCTCTTGCTGCTGGCACGCATCGGCCGGGCGGTCGACCAACTGTGGCAGGACACCCGGCAGGTGCTGGGCT
TCATCGGCCTGATCCTCGAAACCTTGCTGCTGCGCTTGTTCCAGCCCCACCGCTGGCGGGTCACGCCGGTGGTGGCGCAT
CTTGAGCAGACCGGCCTGGACGCCGCGCCAATCGTGGCCCTGCTGACCTTCCTGGTCGGCGCCGTGGTGGCCTTCCTCGG
CGCCACCGTGCTGGCCGCGTTCGGCGCGACGATCTTCACCGTCGACCTGGTGGCGTTCTCCTTCCTGCGCGAATTCGCCG
TGCTGCTGACCGCCATCCTCATGGCCGGGCGCACTGCCAGCGCCTTCACCGCGCAGATCGGCTCGATGAAGGCCAACGAA
GAGATCGACGCCATCCGCACCCTGGGCCTGAACCCCATCGAACTGCTGGTGGTGCCACGGGTGCTGGCACTGCTGATCGC
GCTGCCGCTGCTGACCTTCCTTGCCATGCTCTGTGGCCTGGTCGGCGGCGCGGTGGTCTGCGCCCTGACCCTGGATATCT
CGCCAGCCATGTTCCTCTCGCTGCTGCAGAGCGACATCGGCGTGCAGCACTTCCTGGTGGGCCTGGCCAAGGCGCCGTTC
TTCGCCTTCCTGATCGCCGCCATCGGCTGCCTTGAGGGCTTCAAGGTCAGCGGCAGCGCCGAGTCGGTGGGGGCCCACAC
CACTTCCGCCGTGGTGCAGTCGATCTTCGTGGTCATCGTGCTCGACGCAGTAGCCGCGCTGTTCTTCATGGAGATGGGCT
GGTGA

Upstream 100 bases:

>100_bases
GTTCGCCGGCAAGCCGGCGAACCGATCACATATTCAACAGCCCGCCCACCCTGCTGCGCTATGATCAGCCTCTATGCCCC
CAGTCAGATGCATGGAGCCT

Downstream 100 bases:

>100_bases
CGGGCCGGGAAGCGGTGATCGAGGCGCGGGGCATCTGCAACCGCTTCGGTAGCCAGAGCGTGCACGAAAACCTCGACCTG
GACCTGTACCGCGGCGAAAT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MTAPSAILDTQQQPTRLHIAGDWTLAHYASLKRECERLGSQYGDDTQVDLSQLGRLDTAGASLLAELLGSERLSHCTDDL
PDASRALLKNVYCSVQDYCIPVKQPEQPVLLLLLARIGRAVDQLWQDTRQVLGFIGLILETLLLRLFQPHRWRVTPVVAH
LEQTGLDAAPIVALLTFLVGAVVAFLGATVLAAFGATIFTVDLVAFSFLREFAVLLTAILMAGRTASAFTAQIGSMKANE
EIDAIRTLGLNPIELLVVPRVLALLIALPLLTFLAMLCGLVGGAVVCALTLDISPAMFLSLLQSDIGVQHFLVGLAKAPF
FAFLIAAIGCLEGFKVSGSAESVGAHTTSAVVQSIFVVIVLDAVAALFFMEMGW

Sequences:

>Translated_374_residues
MTAPSAILDTQQQPTRLHIAGDWTLAHYASLKRECERLGSQYGDDTQVDLSQLGRLDTAGASLLAELLGSERLSHCTDDL
PDASRALLKNVYCSVQDYCIPVKQPEQPVLLLLLARIGRAVDQLWQDTRQVLGFIGLILETLLLRLFQPHRWRVTPVVAH
LEQTGLDAAPIVALLTFLVGAVVAFLGATVLAAFGATIFTVDLVAFSFLREFAVLLTAILMAGRTASAFTAQIGSMKANE
EIDAIRTLGLNPIELLVVPRVLALLIALPLLTFLAMLCGLVGGAVVCALTLDISPAMFLSLLQSDIGVQHFLVGLAKAPF
FAFLIAAIGCLEGFKVSGSAESVGAHTTSAVVQSIFVVIVLDAVAALFFMEMGW
>Mature_373_residues
TAPSAILDTQQQPTRLHIAGDWTLAHYASLKRECERLGSQYGDDTQVDLSQLGRLDTAGASLLAELLGSERLSHCTDDLP
DASRALLKNVYCSVQDYCIPVKQPEQPVLLLLLARIGRAVDQLWQDTRQVLGFIGLILETLLLRLFQPHRWRVTPVVAHL
EQTGLDAAPIVALLTFLVGAVVAFLGATVLAAFGATIFTVDLVAFSFLREFAVLLTAILMAGRTASAFTAQIGSMKANEE
IDAIRTLGLNPIELLVVPRVLALLIALPLLTFLAMLCGLVGGAVVCALTLDISPAMFLSLLQSDIGVQHFLVGLAKAPFF
AFLIAAIGCLEGFKVSGSAESVGAHTTSAVVQSIFVVIVLDAVAALFFMEMGW

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=246, Percent_Identity=31.3008130081301, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 40067; Mature: 39935

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPSAILDTQQQPTRLHIAGDWTLAHYASLKRECERLGSQYGDDTQVDLSQLGRLDTAG
CCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHH
ASLLAELLGSERLSHCTDDLPDASRALLKNVYCSVQDYCIPVKQPEQPVLLLLLARIGRA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEECCCCCCCHHHHHHHHHHHHH
VDQLWQDTRQVLGFIGLILETLLLRLFQPHRWRVTPVVAHLEQTGLDAAPIVALLTFLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
AVVAFLGATVLAAFGATIFTVDLVAFSFLREFAVLLTAILMAGRTASAFTAQIGSMKANE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCH
EIDAIRTLGLNPIELLVVPRVLALLIALPLLTFLAMLCGLVGGAVVCALTLDISPAMFLS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLQSDIGVQHFLVGLAKAPFFAFLIAAIGCLEGFKVSGSAESVGAHTTSAVVQSIFVVIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCHHHHHHHHHHHHHHHH
LDAVAALFFMEMGW
HHHHHHHHHHHCCC
>Mature Secondary Structure 
TAPSAILDTQQQPTRLHIAGDWTLAHYASLKRECERLGSQYGDDTQVDLSQLGRLDTAG
CCCHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHH
ASLLAELLGSERLSHCTDDLPDASRALLKNVYCSVQDYCIPVKQPEQPVLLLLLARIGRA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCEECCCCCCCHHHHHHHHHHHHH
VDQLWQDTRQVLGFIGLILETLLLRLFQPHRWRVTPVVAHLEQTGLDAAPIVALLTFLVG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
AVVAFLGATVLAAFGATIFTVDLVAFSFLREFAVLLTAILMAGRTASAFTAQIGSMKANE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCH
EIDAIRTLGLNPIELLVVPRVLALLIALPLLTFLAMLCGLVGGAVVCALTLDISPAMFLS
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLQSDIGVQHFLVGLAKAPFFAFLIAAIGCLEGFKVSGSAESVGAHTTSAVVQSIFVVIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCHHHHHHHHHHHHHHHH
LDAVAALFFMEMGW
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]