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The map label for this gene is yrdA [H]

Identifier: 104779362

GI number: 104779362

Start: 46799

End: 47347

Strand: Reverse

Name: yrdA [H]

Synonym: PSEEN0049

Alternate gene names: 104779362

Gene position: 47347-46799 (Counterclockwise)

Preceding gene: 104779368

Following gene: 104779361

Centisome position: 0.8

GC content: 64.3

Gene sequence:

>549_bases
ATGGCCCTCCGGACCTTCCAGCAACACACGCCGAAAGTGGGAGCACGGGCCTTCGTCGACCGTTCGGCGGTGGTCATCGG
CGACGTCGAGATCGGCGCGGACAGCTCGATCTGGCCGCTGACCGTAGTACGCGGCGACATGCACCGCATCCGCATCGGCG
CGCGCACCAGCGTGCAGGACGGCAGTGTGCTGCACATCACCCACGCCGGGCCGTTCAACCCTGACGGTTTCCCGCTGATC
ATCGGCGACGAGGTGACCATCGGTCATAAAGTCATGCTGCATGGTTGCACCCTGGGCAACCGCATCCTGGTAGGCATGGG
CAGCACGATCATGGACGGCGCCATCGTCGAGGATGAGGTGATCATCGGCGCCGGCAGCCTGGTTCCACCAGGAAAGCGCC
TGGTCAGCGGCTACCTGTACATGGGCAGCCCGGTGAAGCAGGTGCGCCTGCTGAGCGAGCAGGAACACGCGTTCTTCCCC
TACAGCGCCGGCAACTACGTGAAGCTCAAGGACCAACACCTGGCCGAAGGCTACGACCAACCGGAATGA

Upstream 100 bases:

>100_bases
TTCGGGTACCTTGGCAGGAGAAACACGGGACCATCTTAATTACAATCGACGCCGACCGCAGCAGGCAGCCTGCCTATCGG
CATTGCAGAGGAACACTATC

Downstream 100 bases:

>100_bases
CCCATTCGCGGGCAAGCCCGCGAAGCAGTCGACGATAGATTCAAGTGGACCCCGACATGCATCAGCAGAACATCCTCTTC
GACCTCGACGGCACCCTGAC

Product: transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MALRTFQQHTPKVGARAFVDRSAVVIGDVEIGADSSIWPLTVVRGDMHRIRIGARTSVQDGSVLHITHAGPFNPDGFPLI
IGDEVTIGHKVMLHGCTLGNRILVGMGSTIMDGAIVEDEVIIGAGSLVPPGKRLVSGYLYMGSPVKQVRLLSEQEHAFFP
YSAGNYVKLKDQHLAEGYDQPE

Sequences:

>Translated_182_residues
MALRTFQQHTPKVGARAFVDRSAVVIGDVEIGADSSIWPLTVVRGDMHRIRIGARTSVQDGSVLHITHAGPFNPDGFPLI
IGDEVTIGHKVMLHGCTLGNRILVGMGSTIMDGAIVEDEVIIGAGSLVPPGKRLVSGYLYMGSPVKQVRLLSEQEHAFFP
YSAGNYVKLKDQHLAEGYDQPE
>Mature_181_residues
ALRTFQQHTPKVGARAFVDRSAVVIGDVEIGADSSIWPLTVVRGDMHRIRIGARTSVQDGSVLHITHAGPFNPDGFPLII
GDEVTIGHKVMLHGCTLGNRILVGMGSTIMDGAIVEDEVIIGAGSLVPPGKRLVSGYLYMGSPVKQVRLLSEQEHAFFPY
SAGNYVKLKDQHLAEGYDQPE

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=175, Percent_Identity=63.4285714285714, Blast_Score=242, Evalue=1e-65,
Organism=Escherichia coli, GI87081681, Length=169, Percent_Identity=39.6449704142012, Blast_Score=105, Evalue=1e-24,
Organism=Escherichia coli, GI1787667, Length=152, Percent_Identity=38.1578947368421, Blast_Score=103, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19658; Mature: 19527

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALRTFQQHTPKVGARAFVDRSAVVIGDVEIGADSSIWPLTVVRGDMHRIRIGARTSVQD
CCCCCCHHCCCCCCCEEEECCCEEEEEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCC
GSVLHITHAGPFNPDGFPLIIGDEVTIGHKVMLHGCTLGNRILVGMGSTIMDGAIVEDEV
CCEEEEEECCCCCCCCEEEEECCCEEECEEEEEEECCCCCEEEEECCCHHHCCEEECCEE
IIGAGSLVPPGKRLVSGYLYMGSPVKQVRLLSEQEHAFFPYSAGNYVKLKDQHLAEGYDQ
EEECCCCCCCCHHHHEEEEEECCCHHHHHHHCCCCCEEECCCCCCEEEECCCHHHCCCCC
PE
CC
>Mature Secondary Structure 
ALRTFQQHTPKVGARAFVDRSAVVIGDVEIGADSSIWPLTVVRGDMHRIRIGARTSVQD
CCCCCHHCCCCCCCEEEECCCEEEEEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCC
GSVLHITHAGPFNPDGFPLIIGDEVTIGHKVMLHGCTLGNRILVGMGSTIMDGAIVEDEV
CCEEEEEECCCCCCCCEEEEECCCEEECEEEEEEECCCCCEEEEECCCHHHCCEEECCEE
IIGAGSLVPPGKRLVSGYLYMGSPVKQVRLLSEQEHAFFPYSAGNYVKLKDQHLAEGYDQ
EEECCCCCCCCHHHHEEEEEECCCHHHHHHHCCCCCEEECCCCCCEEEECCCHHHCCCCC
PE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]